Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG808_RS29375 Genome accession   NZ_CP109123
Coordinates   6509593..6511518 (-) Length   641 a.a.
NCBI ID   WP_326630526.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01761     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6504593..6516518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG808_RS29360 (OG808_29445) - 6504906..6506165 (+) 1260 WP_326630521.1 FAD-dependent oxidoreductase -
  OG808_RS29365 (OG808_29450) dnaG 6506316..6508223 (+) 1908 WP_326630523.1 DNA primase -
  OG808_RS29370 (OG808_29455) - 6508449..6509576 (+) 1128 WP_326630524.1 RNA polymerase sigma factor -
  OG808_RS29375 (OG808_29460) rcrQ 6509593..6511518 (-) 1926 WP_326630526.1 ABC transporter ATP-binding protein Regulator
  OG808_RS29380 (OG808_29465) rcrP 6511518..6513251 (-) 1734 WP_326630528.1 ABC transporter ATP-binding protein Regulator
  OG808_RS29385 (OG808_29470) - 6513422..6514867 (-) 1446 WP_326630529.1 FGGY family carbohydrate kinase -
  OG808_RS29390 (OG808_29475) - 6514928..6515233 (-) 306 WP_326608456.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69140.47 Da        Isoelectric Point: 5.3040

>NTDB_id=671277 OG808_RS29375 WP_326630526.1 6509593..6511518(-) (rcrQ) [Streptomyces sp. NBC_01761]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRKTNSGLADLLSGVDFIPGHGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGVMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=671277 OG808_RS29375 WP_326630526.1 6509593..6511518(-) (rcrQ) [Streptomyces sp. NBC_01761]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTCTACGGGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGCTGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAAGGCCTGCGCAAGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCATCCC
CGGCCACGGCATCGACTTCGATGCAGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGACACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCACAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGTTGCGAGTGGCGTCGGGTGCACTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAACGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCCGGTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGATCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTACTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.867

93.916

0.374