Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R30_RS16755 Genome accession   NZ_AP022245
Coordinates   3439805..3440410 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WP8-S18-CRE-02     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3434805..3445410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R30_RS16735 (WP8S18C02_32690) aes 3434946..3435905 (+) 960 WP_000801812.1 acetyl esterase -
  H7R30_RS16740 (WP8S18C02_32700) hemH 3435902..3436864 (-) 963 WP_001250103.1 ferrochelatase -
  H7R30_RS16745 (WP8S18C02_32710) adk 3436996..3437640 (-) 645 WP_001220233.1 adenylate kinase -
  H7R30_RS16750 (WP8S18C02_32720) htpG 3437821..3439695 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7R30_RS16755 (WP8S18C02_32730) recR 3439805..3440410 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R30_RS16760 (WP8S18C02_32740) ybaB 3440410..3440739 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R30_RS16765 (WP8S18C02_32750) dnaX 3440792..3442723 (-) 1932 WP_024197998.1 DNA polymerase III subunit gamma/tau -
  H7R30_RS16770 (WP8S18C02_32760) apt 3442852..3443403 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R30_RS16775 (WP8S18C02_32770) ybaN 3443556..3443933 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R30_RS16780 (WP8S18C02_32780) priC 3444003..3444530 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  H7R30_RS16785 (WP8S18C02_32790) rsmS 3444544..3444705 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67124 H7R30_RS16755 WP_001195025.1 3439805..3440410(-) (recR) [Escherichia coli strain WP8-S18-CRE-02]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67124 H7R30_RS16755 WP_001195025.1 3439805..3440410(-) (recR) [Escherichia coli strain WP8-S18-CRE-02]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment