Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA92_RS01245 Genome accession   NZ_CP094721
Coordinates   263554..264918 (+) Length   454 a.a.
NCBI ID   WP_262560077.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258554..269918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS01225 (MUA92_01225) - 258925..259386 (+) 462 WP_262560074.1 CtsR family transcriptional regulator -
  MUA92_RS01230 (MUA92_01230) - 259524..259943 (+) 420 Protein_226 UvrB/UvrC motif-containing protein -
  MUA92_RS01235 (MUA92_01235) - 259933..260937 (+) 1005 WP_262560075.1 protein arginine kinase -
  MUA92_RS01240 (MUA92_01240) - 260953..263400 (+) 2448 WP_262560076.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA92_RS01245 (MUA92_01245) radA 263554..264918 (+) 1365 WP_262560077.1 DNA repair protein RadA Machinery gene
  MUA92_RS01250 (MUA92_01250) ispD 264959..265657 (+) 699 WP_262560078.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA92_RS01255 (MUA92_01255) ispF 265650..266132 (+) 483 WP_262560079.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA92_RS01260 (MUA92_01260) gltX 266463..267917 (+) 1455 WP_262615630.1 glutamate--tRNA ligase -
  MUA92_RS01265 (MUA92_01265) cysE 268215..268856 (+) 642 WP_262615632.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49988.59 Da        Isoelectric Point: 7.5077

>NTDB_id=671222 MUA92_RS01245 WP_262560077.1 263554..264918(+) (radA) [Staphylococcus sp. IVB6227]
MAKKKVTFECTACGYQTPKWMGKCPNCGAWNSMEETIEQKTSHSKHSVRTESTAKVQKLNDVKQEQAPRILTKSRELNRV
LGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKERKILYITGEESLNQTKLRADRLEEDASALNVFAETNLEIIHEAVK
KLEPELIVVDSIQTIFHPDITSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLHSVVNPSEMFLEERSSNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIIIATATSFKDRAVDGLDCFIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGIEVIGVTSVHEALKYALKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=671222 MUA92_RS01245 WP_262560077.1 263554..264918(+) (radA) [Staphylococcus sp. IVB6227]
ATGGCAAAAAAGAAAGTGACTTTTGAGTGTACGGCATGTGGCTATCAAACGCCGAAATGGATGGGGAAATGCCCTAACTG
CGGTGCGTGGAATAGTATGGAAGAGACGATTGAACAAAAAACGTCACACTCAAAACATAGTGTTCGTACAGAATCGACAG
CTAAAGTGCAAAAACTGAATGATGTCAAACAAGAGCAAGCGCCGCGCATTTTAACAAAAAGCCGAGAACTGAATCGTGTG
CTCGGTGGCGGGATTGTACAAGGTTCACTCGTACTGATCGGGGGAGATCCAGGTATTGGTAAGTCGACGTTATTGCTACA
AATGTGTGCAGCATTATCTAAGGAGCGCAAGATTTTATATATTACGGGTGAAGAATCTTTGAATCAAACGAAGCTGCGTG
CTGATCGTCTAGAAGAAGATGCCAGTGCTTTGAATGTCTTTGCAGAGACAAACTTAGAAATCATTCATGAAGCAGTGAAG
AAGTTAGAACCAGAGTTAATTGTCGTTGACTCGATTCAGACAATTTTTCATCCTGACATTACATCGGCGCCAGGATCTGT
GTCACAAGTGCGAGAAAGTACACAAAGTTTGATGCATATCGCCAAGCAGATGAATATTGCGACGTTTATTGTTGGACATG
TGACGAAAGAAGGTCAGATTGCAGGTCCGCGTTTATTAGAACATATGGTAGACACTGTACTGTATTTTGAAGGAGATGAG
CACCATGCGTATCGTATTTTACGTGCAGTGAAAAACCGTTTTGGCTCTACGAATGAGATGGGTATTTTTGAGATGAAACA
GTCTGGTTTACACAGTGTCGTCAACCCATCAGAGATGTTTTTAGAAGAGCGTTCATCCAACGTTCCAGGCTCAACGATTG
TTGCTACGATGGAAGGGACACGTCCATTACTCATCGAAGTACAAGCGCTTGTGACGCCGACGACTTTCAATAATCCACGT
CGAATGGCGACAGGTATCGATCACAATCGTTTAAGCTTGTTAATGGCAGTACTCGAGAAGAAAGAAGGGTACTTGTTACA
ACAACAAGATGCGTATATTAAAGTTGCGGGCGGTGTGAAGTTGACAGAGCCTGCCGTAGACTTAGGTATTATCATTGCCA
CAGCGACAAGCTTCAAAGATCGTGCGGTTGATGGATTGGATTGCTTTATAGGTGAAGTAGGTCTTACAGGAGAAGTACGA
CGTGTGTCACGTATTGAACAGCGTGTACAAGAAGCGGCAAAGTTAGGCTTCAAGCGTGTCATTATTCCACAGACCAATAT
TGGTGGATGGACATTCCCAGAAGGCATAGAAGTGATCGGTGTGACATCGGTTCATGAAGCATTGAAGTATGCTTTAAAAT
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.661
  radA Streptococcus pneumoniae Rx1

58.797

98.899

0.581
  radA Streptococcus pneumoniae D39

58.797

98.899

0.581
  radA Streptococcus pneumoniae R6

58.797

98.899

0.581
  radA Streptococcus pneumoniae TIGR4

58.797

98.899

0.581
  radA Streptococcus mitis NCTC 12261

58.797

98.899

0.581
  radA Streptococcus mitis SK321

58.797

98.899

0.581