Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA92_RS00210 Genome accession   NZ_CP094721
Coordinates   42086..43714 (-) Length   542 a.a.
NCBI ID   WP_262615569.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37086..48714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS00170 (MUA92_00170) - 37302..37850 (-) 549 WP_262615559.1 hypothetical protein -
  MUA92_RS00175 (MUA92_00175) - 38042..38407 (-) 366 WP_262615560.1 DUF4870 domain-containing protein -
  MUA92_RS00180 (MUA92_00180) - 38434..39306 (-) 873 WP_262615562.1 HTH domain-containing protein -
  MUA92_RS00185 (MUA92_00185) - 39476..39922 (-) 447 WP_262615563.1 JAB domain-containing protein -
  MUA92_RS00190 (MUA92_00190) - 39943..40449 (-) 507 WP_262615565.1 DUF1643 domain-containing protein -
  MUA92_RS00195 (MUA92_00195) - 40463..40774 (-) 312 WP_107519034.1 DUF960 family protein -
  MUA92_RS00200 (MUA92_00200) - 40870..41208 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA92_RS00205 (MUA92_00205) - 41764..42051 (+) 288 WP_262615568.1 hypothetical protein -
  MUA92_RS00210 (MUA92_00210) ccrB 42086..43714 (-) 1629 WP_262615569.1 recombinase family protein Machinery gene
  MUA92_RS00215 (MUA92_00215) ccrA 43736..45085 (-) 1350 WP_250396288.1 recombinase family protein Machinery gene
  MUA92_RS00220 (MUA92_00220) - 45264..47048 (-) 1785 WP_262615571.1 DUF927 domain-containing protein -
  MUA92_RS00225 (MUA92_00225) - 47174..48604 (-) 1431 WP_262615572.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62647.65 Da        Isoelectric Point: 9.6456

>NTDB_id=671218 MUA92_RS00210 WP_262615569.1 42086..43714(-) (ccrB) [Staphylococcus sp. IVB6227]
MQQLKQKRVGIYVRVSTEIQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPFYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFFVTLKLNNEIIKQLFNNNSLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671218 MUA92_RS00210 WP_262615569.1 42086..43714(-) (ccrB) [Staphylococcus sp. IVB6227]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTGCTGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGACAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
ATTCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGTAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACATCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
TTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATAACTCGCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTTTACCTTACAATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.454

100

0.875