Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA48_RS01355 Genome accession   NZ_CP094719
Coordinates   285515..286876 (+) Length   453 a.a.
NCBI ID   WP_262604340.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280515..291876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA48_RS01335 (MUA48_01325) - 280886..281347 (+) 462 WP_262605080.1 CtsR family transcriptional regulator -
  MUA48_RS01340 (MUA48_01330) - 281464..281904 (+) 441 Protein_244 UvrB/UvrC motif-containing protein -
  MUA48_RS01345 (MUA48_01335) - 281894..282895 (+) 1002 WP_262604338.1 protein arginine kinase -
  MUA48_RS01350 (MUA48_01340) - 282912..285359 (+) 2448 WP_262604339.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA48_RS01355 (MUA48_01345) radA 285515..286876 (+) 1362 WP_262604340.1 DNA repair protein RadA Machinery gene
  MUA48_RS01360 (MUA48_01350) ispD 286920..287618 (+) 699 WP_262604341.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA48_RS01365 (MUA48_01355) ispF 287611..288093 (+) 483 WP_262604342.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA48_RS01370 (MUA48_01360) gltX 288433..289887 (+) 1455 WP_262604343.1 glutamate--tRNA ligase -
  MUA48_RS01375 (MUA48_01365) cysE 290187..290828 (+) 642 WP_262604344.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49779.35 Da        Isoelectric Point: 7.4849

>NTDB_id=671155 MUA48_RS01355 WP_262604340.1 285515..286876(+) (radA) [Staphylococcus sp. IVB6238]
MAKKKVTFECTACGYQSPKWMGKCPNCGAWNSMEETIEQKTTSAKHGVRSESTAKVQKLNDVKQEQAPRILTKSRELNRV
LGGGIVQGSLVLIGGDPGIGKSTLLLQMCASLSKERKILYITGEESLNQTKLRADRLEEDASALNVFAETNLEIIHEAVK
KLEPELIVVDSIQTIFHPDITSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLHSVVNPSEMFLEERSSNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIIIATATSFKDRAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGIEVIGVTSVHEALKYALK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=671155 MUA48_RS01355 WP_262604340.1 285515..286876(+) (radA) [Staphylococcus sp. IVB6238]
ATGGCGAAAAAGAAAGTAACCTTTGAATGTACAGCGTGTGGTTATCAATCTCCCAAGTGGATGGGTAAGTGCCCAAATTG
TGGCGCATGGAATAGTATGGAAGAGACGATTGAACAGAAGACAACGAGTGCGAAACATGGTGTACGCTCTGAATCAACAG
CAAAAGTTCAAAAATTGAATGATGTGAAACAAGAACAAGCACCTCGTATTTTGACGAAAAGTCGAGAATTAAATCGTGTA
TTAGGTGGGGGCATTGTCCAGGGGTCACTTGTATTAATCGGTGGTGATCCAGGAATTGGGAAATCAACCTTGTTATTACA
AATGTGTGCGTCATTATCTAAAGAACGTAAGATTCTGTATATCACAGGTGAGGAATCATTAAACCAAACAAAATTGCGCG
CAGATCGTTTAGAAGAAGATGCGAGTGCTTTAAATGTTTTTGCGGAAACGAATTTAGAAATTATTCATGAAGCCGTGAAA
AAATTAGAGCCAGAGTTGATTGTTGTCGACTCGATTCAAACGATTTTTCATCCAGATATTACATCAGCGCCAGGGTCAGT
GTCACAAGTACGAGAGAGTACACAAAGTTTGATGCATATTGCTAAACAAATGAATGTGGCGACATTTATTGTAGGTCATG
TGACAAAAGAAGGTCAGATTGCAGGGCCACGTTTGTTAGAACATATGGTAGATACTGTTCTCTATTTTGAAGGGGACGAG
CATCATGCGTATCGTATTTTACGCGCGGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGCATTTTTGAAATGAAACA
GTCAGGGTTACATAGCGTTGTGAATCCATCAGAAATGTTTCTGGAAGAGCGCTCATCTAATGTGCCAGGATCGACAATTG
TTGCTACGATGGAGGGGACACGCCCATTATTAATTGAAGTTCAAGCACTTGTTACACCAACTACCTTCAACAACCCACGT
CGTATGGCAACGGGGATCGACCATAATCGCTTAAGCTTGTTAATGGCTGTGCTAGAGAAGAAAGAAGGCTACTTGTTACA
ACAGCAAGATGCCTATATTAAAGTGGCAGGGGGCGTGAAATTAACAGAGCCTGCTGTCGACTTAGGGATTATTATCGCGA
CAGCAACAAGTTTCAAAGATCGTGCTGTAGATGGTTTGGATTGCTTTGTAGGCGAAGTGGGGCTTACAGGGGAAGTGCGA
CGTGTGTCACGTATTGAACAACGTGTGCAAGAAGCAGCTAAGTTGGGATTTAAACGTGTCATTATTCCTCAAACAAATAT
CGGGGGATGGACGTTCCCTGAAGGTATTGAAGTAATTGGTGTCACGTCGGTACATGAAGCATTGAAATATGCGTTGAAAT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.662
  radA Streptococcus pneumoniae Rx1

59.333

99.338

0.589
  radA Streptococcus pneumoniae D39

59.333

99.338

0.589
  radA Streptococcus pneumoniae R6

59.333

99.338

0.589
  radA Streptococcus pneumoniae TIGR4

59.333

99.338

0.589
  radA Streptococcus mitis NCTC 12261

59.333

99.338

0.589
  radA Streptococcus mitis SK321

59.333

99.338

0.589