Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA88_RS08085 Genome accession   NZ_CP094718
Coordinates   1626608..1627324 (+) Length   238 a.a.
NCBI ID   WP_262603679.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621608..1632324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS08060 (MUA88_08045) - 1621853..1622848 (-) 996 WP_262603674.1 SdrH family protein -
  MUA88_RS08065 (MUA88_08050) - 1623124..1623921 (+) 798 WP_262605370.1 carbon-nitrogen family hydrolase -
  MUA88_RS08070 (MUA88_08055) - 1624560..1625126 (+) 567 WP_262603676.1 accessory gene regulator AgrB -
  MUA88_RS08075 (MUA88_08060) - 1625129..1625266 (+) 138 WP_262603677.1 cyclic lactone autoinducer peptide -
  MUA88_RS08080 (MUA88_08065) - 1625832..1626596 (+) 765 WP_262603678.1 GHKL domain-containing protein -
  MUA88_RS08085 (MUA88_08070) agrA 1626608..1627324 (+) 717 WP_262603679.1 LytTR family DNA-binding domain-containing protein Regulator
  MUA88_RS08090 (MUA88_08075) - 1627371..1628318 (-) 948 WP_262603680.1 carbohydrate kinase -
  MUA88_RS08095 (MUA88_08080) - 1628311..1629804 (-) 1494 WP_262603681.1 sucrose-6-phosphate hydrolase -
  MUA88_RS08100 (MUA88_08085) - 1629820..1630803 (-) 984 WP_262603682.1 LacI family DNA-binding transcriptional regulator -
  MUA88_RS08105 (MUA88_08090) - 1631015..1631239 (-) 225 WP_262559268.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27809.71 Da        Isoelectric Point: 5.8299

>NTDB_id=671144 MUA88_RS08085 WP_262603679.1 1626608..1627324(+) (agrA) [Staphylococcus sp. IVB6240]
MKIFICEDDPKQRARMEEIINTYIMIEEKPMEIALSTDDPYELINASKHSTDVGCYFLDIQLESDINGIKVGSEIRKHDP
IGNIVYVTSHSELTYLTFVYKVAAMDFIFKDDPDQLKKRVIDCLETALDRLNLLTKEETVETIELKRGSGSEYVHYDDVM
FFESSPKSHRVIAHLDNRQVEFYGKLKELSQVDQRFFRCHNSFVLNRHNISNVEPKERVVHFKNGEFCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=671144 MUA88_RS08085 WP_262603679.1 1626608..1627324(+) (agrA) [Staphylococcus sp. IVB6240]
ATGAAAATATTCATTTGCGAAGATGATCCGAAACAACGCGCGCGAATGGAAGAGATCATCAATACGTATATTATGATTGA
GGAAAAGCCGATGGAAATTGCGCTTTCAACGGATGATCCTTATGAATTGATTAACGCCTCCAAGCATTCAACGGATGTTG
GCTGTTACTTTTTAGATATTCAATTGGAATCAGATATCAATGGTATTAAAGTGGGTAGTGAGATTCGAAAGCATGATCCA
ATTGGCAATATCGTCTATGTAACGAGTCATAGCGAATTAACCTATTTAACATTTGTCTATAAAGTTGCAGCGATGGATTT
TATTTTTAAGGACGATCCTGATCAGCTGAAGAAACGCGTTATCGATTGTTTAGAAACTGCACTGGATCGCCTTAATTTGC
TCACTAAGGAAGAGACAGTTGAAACGATTGAATTGAAGCGTGGAAGTGGTTCAGAATATGTTCATTATGATGATGTCATG
TTCTTTGAGTCTTCACCTAAATCACATCGTGTGATCGCCCACTTAGACAATCGACAAGTAGAGTTTTACGGCAAGCTTAA
AGAATTATCACAAGTGGATCAACGATTCTTCCGCTGTCATAATAGTTTCGTACTAAACCGTCATAACATTTCTAACGTTG
AACCGAAAGAACGGGTCGTCCACTTTAAAAATGGAGAATTTTGTTACGCATCTGTGCGTAATATTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

76.471

100

0.765