Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA88_RS01180 Genome accession   NZ_CP094718
Coordinates   254965..256326 (+) Length   453 a.a.
NCBI ID   WP_262605651.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 249965..261326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS01160 (MUA88_01155) - 250335..250796 (+) 462 WP_262605080.1 CtsR family transcriptional regulator -
  MUA88_RS01165 (MUA88_01160) - 250913..251353 (+) 441 Protein_209 UvrB/UvrC motif-containing protein -
  MUA88_RS01170 (MUA88_01165) - 251343..252344 (+) 1002 WP_262604338.1 protein arginine kinase -
  MUA88_RS01175 (MUA88_01170) - 252361..254808 (+) 2448 WP_262604339.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA88_RS01180 (MUA88_01175) radA 254965..256326 (+) 1362 WP_262605651.1 DNA repair protein RadA Machinery gene
  MUA88_RS01185 (MUA88_01180) ispD 256370..257068 (+) 699 WP_262604341.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA88_RS01190 (MUA88_01185) ispF 257061..257543 (+) 483 WP_262604342.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA88_RS01195 (MUA88_01190) gltX 257883..259337 (+) 1455 WP_262604343.1 glutamate--tRNA ligase -
  MUA88_RS01200 (MUA88_01195) cysE 259637..260278 (+) 642 WP_262605652.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49761.31 Da        Isoelectric Point: 7.4849

>NTDB_id=671123 MUA88_RS01180 WP_262605651.1 254965..256326(+) (radA) [Staphylococcus sp. IVB6240]
MAKKKVTFECTACGYQSPKWMGKCPNCGAWNSMEETIEQKTTSAKHGVRSESTAKVQKLNDVKQEQAPRILTKSRELNRV
LGGGIVQGSLVLIGGDPGIGKSTLLLQMCASLSKERKILYITGEESLNQTKLRADRLEEDASALNVFAETNLEIIHEAVK
KLEPELIVVDSIQTIFHPDITSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLHSVVNPSEMFLEERSSNVPGSTIVATIEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIIIATATSFKDRAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGIEVIGVTSVHEALKYALK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=671123 MUA88_RS01180 WP_262605651.1 254965..256326(+) (radA) [Staphylococcus sp. IVB6240]
ATGGCGAAAAAGAAAGTAACCTTTGAATGTACAGCGTGTGGTTATCAATCTCCCAAGTGGATGGGTAAGTGCCCAAATTG
TGGCGCATGGAATAGTATGGAAGAGACGATTGAACAGAAGACAACGAGTGCGAAACATGGTGTACGCTCTGAATCAACAG
CAAAAGTTCAAAAATTGAATGATGTGAAACAAGAACAAGCACCTCGTATTTTGACGAAAAGTCGAGAATTAAATCGTGTA
TTAGGTGGGGGCATTGTCCAGGGGTCACTTGTATTAATCGGTGGTGATCCAGGAATTGGGAAATCAACCTTGTTATTACA
AATGTGTGCGTCATTATCTAAAGAACGTAAGATTCTGTATATCACAGGTGAGGAATCATTAAACCAAACAAAATTGCGCG
CAGATCGTTTAGAAGAAGATGCGAGTGCTTTAAATGTTTTTGCGGAAACGAATTTAGAAATTATTCATGAAGCCGTGAAA
AAATTAGAGCCAGAGTTGATTGTTGTCGACTCGATTCAAACGATTTTTCATCCAGATATTACATCAGCGCCAGGGTCAGT
GTCACAAGTACGAGAGAGTACACAAAGTTTGATGCATATTGCTAAACAAATGAATGTGGCGACATTTATTGTAGGTCATG
TGACAAAAGAAGGTCAGATTGCAGGGCCACGTTTGTTAGAACATATGGTAGATACTGTTCTCTATTTTGAAGGGGACGAG
CATCATGCGTATCGTATTTTACGCGCGGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGCATTTTTGAAATGAAACA
GTCAGGGTTACATAGCGTTGTGAATCCATCAGAAATGTTTCTGGAAGAGCGCTCATCTAATGTGCCAGGATCGACAATTG
TTGCTACGATTGAGGGGACACGCCCATTATTAATTGAAGTTCAAGCACTTGTTACACCAACTACCTTCAACAACCCACGT
CGTATGGCAACGGGGATCGACCATAATCGCTTAAGCTTGTTAATGGCTGTGCTAGAGAAGAAAGAAGGCTACTTGTTACA
ACAGCAAGATGCCTATATTAAAGTGGCAGGGGGCGTGAAATTAACAGAGCCTGCTGTCGACTTAGGGATTATTATCGCGA
CAGCAACAAGTTTCAAAGATCGTGCTGTAGATGGTTTGGATTGCTTTGTAGGCGAAGTGGGGCTTACAGGGGAAGTGCGA
CGTGTGTCACGTATTGAACAACGTGTGCAAGAAGCAGCTAAGTTGGGATTTAAACGTGTCATTATTCCTCAAACAAATAT
CGGGGGATGGACGTTCCCTGAAGGTATTGAAGTAATTGGTGTCACGTCGGTACATGAAGCATTGAAATATGCGTTGAAAT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.66
  radA Streptococcus pneumoniae Rx1

59.111

99.338

0.587
  radA Streptococcus pneumoniae D39

59.111

99.338

0.587
  radA Streptococcus pneumoniae R6

59.111

99.338

0.587
  radA Streptococcus pneumoniae TIGR4

59.111

99.338

0.587
  radA Streptococcus mitis NCTC 12261

59.111

99.338

0.587
  radA Streptococcus mitis SK321

59.111

99.338

0.587