Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA26_RS00180 Genome accession   NZ_CP094717
Coordinates   39563..41191 (-) Length   542 a.a.
NCBI ID   WP_262614241.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34563..46191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS00155 (MUA26_00155) - 34952..37504 (+) 2553 WP_262614238.1 DEAD/DEAH box helicase family protein -
  MUA26_RS00160 (MUA26_00160) - 37591..37812 (-) 222 WP_262614239.1 hypothetical protein -
  MUA26_RS00165 (MUA26_00165) - 37827..38330 (-) 504 WP_262609298.1 DUF1643 domain-containing protein -
  MUA26_RS00170 (MUA26_00170) - 38345..38656 (-) 312 WP_031912426.1 DUF960 family protein -
  MUA26_RS00175 (MUA26_00175) - 38752..39090 (-) 339 WP_262614240.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA26_RS00180 (MUA26_00180) ccrB 39563..41191 (-) 1629 WP_262614241.1 recombinase family protein Machinery gene
  MUA26_RS00185 (MUA26_00185) ccrA 41213..42562 (-) 1350 WP_262614242.1 recombinase family protein Machinery gene
  MUA26_RS00190 (MUA26_00190) - 42741..44525 (-) 1785 WP_262614243.1 DUF927 domain-containing protein -
  MUA26_RS00195 (MUA26_00195) - 44651..45379 (-) 729 WP_346657965.1 DUF6038 family protein -
  MUA26_RS00200 (MUA26_00200) - 45369..45521 (-) 153 WP_346657966.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62637.48 Da        Isoelectric Point: 9.4588

>NTDB_id=671085 MUA26_RS00180 WP_262614241.1 39563..41191(-) (ccrB) [Staphylococcus sp. IVB6246]
MQQLKQKRVGIYVRVSTEMQSTEGYSIEGQINQIKEYCQFHHFEVTDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILTNPFYIGKIQFAK
YKDWNEKRRKGLNDNPIIADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTQLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671085 MUA26_RS00180 WP_262614241.1 39563..41191(-) (ccrB) [Staphylococcus sp. IVB6246]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTACAGAAGGTTATAGTAT
TGAAGGTCAAATCAATCAGATTAAAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTGTCTGAGCGTATGGAAGTCAATACTTCTTCTGGTAAGCTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGTCATGGTTATCGAAAAATGGCTAACGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTTAGTACATCAGCTATAGCTTATATCCTTACCAACCCCTTCTACATCGGTAAAATTCAATTTGCGAAG
TATAAAGACTGGAATGAGAAACGACGTAAAGGTCTTAATGACAATCCTATAATAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCCCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCAGCTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.9

100

0.869