Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA61_RS11150 Genome accession   NZ_CP094715
Coordinates   2262383..2263747 (-) Length   454 a.a.
NCBI ID   WP_029056343.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain IVB6198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2257383..2268747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA61_RS11135 (MUA61_11120) cysE 2258549..2259178 (-) 630 WP_176745279.1 serine O-acetyltransferase -
  MUA61_RS11140 (MUA61_11125) gltX 2259544..2260998 (-) 1455 WP_262551837.1 glutamate--tRNA ligase -
  MUA61_RS11145 (MUA61_11130) - 2261283..2262356 (-) 1074 WP_262551839.1 PIN/TRAM domain-containing protein -
  MUA61_RS11150 (MUA61_11135) radA 2262383..2263747 (-) 1365 WP_029056343.1 DNA repair protein RadA Machinery gene
  MUA61_RS11155 (MUA61_11140) - 2264082..2266535 (-) 2454 WP_029056342.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA61_RS11160 (MUA61_11145) - 2266551..2267555 (-) 1005 WP_037555779.1 protein arginine kinase -
  MUA61_RS11165 (MUA61_11150) - 2267548..2268102 (-) 555 WP_029056340.1 UvrB/UvrC motif-containing protein -
  MUA61_RS11170 (MUA61_11155) - 2268123..2268584 (-) 462 WP_002451197.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49864.37 Da        Isoelectric Point: 6.9555

>NTDB_id=671079 MUA61_RS11150 WP_029056343.1 2262383..2263747(-) (radA) [Staphylococcus pasteuri strain IVB6198]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKHESTPRVLTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVMNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHDALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=671079 MUA61_RS11150 WP_029056343.1 2262383..2263747(-) (radA) [Staphylococcus pasteuri strain IVB6198]
TTGGCCAAGAAAAAAATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGGAAATGCCCTAACTG
TGGTGCATGGAACCAAATGGAAGAAATAGTTGAAAAAGCCGCCAATCCAAAACATGGTGTTAAATCCAAAGAAACTGCAG
GAAAAGTACAAACACTGGACAGTATTAAACATGAATCTACACCACGAGTGCTTACAGAATCAAAAGAGTTTAACCGTGTA
CTTGGTGGAGGCATTGTAAATGGATCGCTTGTCTTAATAGGCGGTGACCCAGGTATTGGGAAGTCAACATTACTTTTACA
AATTTGTGCTTCTCTCTCTCAATCTAAAAATGTTTTATACATTACAGGTGAGGAATCAATTAATCAAACAAAACTTCGTG
CAGATCGCTTAGAAGAAGACTCAAGCAAGTTACAAGTGTTGGCTGAAACAGATCTAGAAGTAATCTATCAGACAGTTAAA
GATATTAATCCAGATTTATTAGTCGTTGACTCAATACAAACAATTTATCACCCAGAAATTAGTTCCGCACCTGGTTCTGT
CTCTCAAGTAAGAGAGAGTACACAAAGCTTAATGAATATCGCTAAACAAATGAATATCGCGACATTTATTGTTGGTCATG
TTACTAAAGAGGGGCAAATAGCTGGACCTAGATTACTCGAACACATGGTTGATACAGTGCTTTATTTCGAAGGTGATGAA
CACCATGCCTATAGAATATTAAGAGCCGTTAAAAACCGTTTTGGTTCAACTAATGAGATGGGTATTTTTGAAATGAAACA
AAGCGGGTTAAAAGGAGTTATGAATCCTTCCGAAATGTTTTTAGAAGAACGTTCTACTAATGTTCCAGGGTCAACAATAG
TATCGACTATGGAAGGAACAAGACCTTTACTTATTGAAGTTCAGGCTTTAGTAACACCTACAACATTCAACAACCCACGT
CGAATGGCTACAGGCATTGACCACAATCGCTTGAGCTTATTAATGGCAGTGTTAGAGAAAAAAGAAAATTATCTACTACA
GCAACAAGATGCATATATTAAAGTAGCTGGAGGAGTGAAATTAACTGAACCAGCAGTTGATCTTAGTATTATAGTTGCTA
CTGCATCTAGTTTTAAAGATAAAGCAGTAGACGGCTTAGATTGTTTTATTGGCGAAGTTGGTTTGACTGGTGAAGTAAGA
CGAGTAGCAAGAATTGAACAGCGTGTTCAAGAAGCTGCAAAATTAGGATTTAAAAGGGTGATTATTCCACAAACTAATAT
TGGTGGTTGGACATTCCCTGAGGATATAAAAGTTGTCGGTGTATCATCAGTTCATGACGCATTAAAGTATGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(70-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.67
  radA Streptococcus pneumoniae Rx1

59.956

99.559

0.597
  radA Streptococcus pneumoniae D39

59.956

99.559

0.597
  radA Streptococcus pneumoniae R6

59.956

99.559

0.597
  radA Streptococcus pneumoniae TIGR4

59.956

99.559

0.597
  radA Streptococcus mitis NCTC 12261

59.956

99.559

0.597
  radA Streptococcus mitis SK321

59.956

99.559

0.597