Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MUA61_RS10065 Genome accession   NZ_CP094715
Coordinates   2038932..2039900 (-) Length   322 a.a.
NCBI ID   WP_017637112.1    Uniprot ID   A0A653Z3V4
Organism   Staphylococcus pasteuri strain IVB6198     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2037213..2049658 2038932..2039900 within 0


Gene organization within MGE regions


Location: 2037213..2049658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA61_RS10055 (MUA61_10045) - 2037213..2037986 (-) 774 WP_017637110.1 ABC transporter ATP-binding protein -
  MUA61_RS10060 (MUA61_10050) - 2037983..2038942 (-) 960 WP_017637111.1 iron chelate uptake ABC transporter family permease subunit -
  MUA61_RS10065 (MUA61_10055) ceuB 2038932..2039900 (-) 969 WP_017637112.1 ABC transporter permease Machinery gene
  MUA61_RS10070 (MUA61_10060) nrdF 2040110..2041084 (-) 975 WP_002450939.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MUA61_RS10075 (MUA61_10065) nrdE 2041475..2043580 (-) 2106 WP_070452487.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MUA61_RS10080 (MUA61_10070) nrdI 2043543..2043941 (-) 399 WP_026083473.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MUA61_RS10085 (MUA61_10075) - 2044742..2045620 (+) 879 WP_070452490.1 DMT family transporter -
  MUA61_RS10090 (MUA61_10080) queF 2045638..2046138 (+) 501 WP_029056472.1 preQ(1) synthase -
  MUA61_RS10095 (MUA61_10085) - 2046461..2047966 (+) 1506 WP_124760791.1 peptide MFS transporter -
  MUA61_RS10100 (MUA61_10090) - 2048115..2049044 (+) 930 WP_070452496.1 diacylglycerol kinase family protein -
  MUA61_RS10105 (MUA61_10095) - 2049122..2049658 (-) 537 WP_029056470.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.76 Da        Isoelectric Point: 10.1815

>NTDB_id=671077 MUA61_RS10065 WP_017637112.1 2038932..2039900(-) (ceuB) [Staphylococcus pasteuri strain IVB6198]
MKFLLKGYVLLIFLVAFTVLSLFVGVSQISITDIFHLNSDQLNIILSSRIPRTVSILISGSTLGIAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILLSLIFFPKGHILIKLIFAVICSVVGTYFFVKLVQLIKVKDVIFIPLLGIMLGGIVSSFTTFIALR
TNAVQSIGNWLNGNFAIITSGRYEVLYLSIPFLIITYIFANHFTIAGMGKDFSHNLGVNYEKIINIALFITATITALVVV
TVGTLPFLGLIVPNIISIYRGDHLKHALPHTMMLGAVFVLFSDIIGRLIVYPYEINIGLTIGVFGTIIFLILLMKGRGNY
AN

Nucleotide


Download         Length: 969 bp        

>NTDB_id=671077 MUA61_RS10065 WP_017637112.1 2038932..2039900(-) (ceuB) [Staphylococcus pasteuri strain IVB6198]
ATGAAGTTTTTACTTAAGGGATATGTTTTACTCATCTTTCTTGTTGCGTTTACGGTTCTTTCTTTATTTGTTGGTGTTAG
CCAAATATCGATTACTGATATTTTCCATCTTAACAGCGACCAATTAAATATTATTTTATCGAGTCGTATTCCTCGAACAG
TTAGTATTCTCATATCAGGTAGTACATTGGGTATCGCTGGTTTAATTATGCAACAAATGATGCAAAATAAATTTGTAAGT
CCAACGACAGCAGGTACGATGGAATGGGCAAAATTAGGTATTTTATTATCTTTAATTTTCTTTCCTAAAGGACATATACT
TATCAAATTAATTTTTGCTGTTATATGCAGTGTAGTTGGAACTTATTTCTTTGTTAAATTAGTTCAACTTATTAAGGTAA
AAGATGTTATCTTTATTCCGTTGTTAGGTATTATGCTTGGTGGCATAGTTTCTAGTTTTACGACATTTATTGCGTTACGT
ACAAATGCAGTTCAAAGCATAGGTAATTGGTTGAATGGTAATTTTGCCATTATTACTAGTGGTCGTTACGAAGTATTATA
TTTAAGTATTCCGTTTTTAATAATTACATATATATTTGCGAACCATTTTACGATTGCGGGTATGGGCAAAGACTTCAGCC
ATAACTTAGGAGTTAACTATGAAAAAATAATTAACATCGCTTTATTTATAACTGCAACAATTACTGCGCTTGTTGTTGTC
ACTGTTGGTACATTACCATTTCTAGGGTTAATTGTTCCTAATATCATTTCAATTTATAGAGGAGACCATTTAAAACATGC
TTTACCTCATACAATGATGTTAGGTGCGGTCTTTGTGCTGTTTTCAGACATTATAGGTCGACTAATCGTGTACCCATACG
AAATTAACATCGGTTTAACTATAGGTGTGTTTGGAACTATTATATTCCTTATCTTATTGATGAAAGGTAGGGGTAATTAT
GCTAACTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653Z3V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.438

99.379

0.481