Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE60_RS24975 Genome accession   NZ_CP109118
Coordinates   5667104..5668837 (-) Length   577 a.a.
NCBI ID   WP_250298194.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01766     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5662104..5673837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE60_RS24965 (OIE60_24980) - 5663784..5665007 (+) 1224 WP_326694942.1 sigma-70 family RNA polymerase sigma factor -
  OIE60_RS24970 (OIE60_24985) rcrQ 5665182..5667104 (-) 1923 WP_250298195.1 ABC transporter ATP-binding protein Regulator
  OIE60_RS24975 (OIE60_24990) rcrP 5667104..5668837 (-) 1734 WP_250298194.1 ABC transporter ATP-binding protein Regulator
  OIE60_RS24980 (OIE60_24995) - 5668946..5670391 (-) 1446 WP_250298193.1 FGGY family carbohydrate kinase -
  OIE60_RS24985 (OIE60_25000) - 5670422..5670721 (-) 300 WP_250298192.1 YtxH domain-containing protein -
  OIE60_RS25005 (OIE60_25020) - 5671744..5672906 (+) 1163 WP_326694943.1 IS3 family transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62773.16 Da        Isoelectric Point: 5.9737

>NTDB_id=671024 OIE60_RS24975 WP_250298194.1 5667104..5668837(-) (rcrP) [Streptomyces sp. NBC_01766]
MLIQLLRTYLRPYKKPMALLALLQLFQTCATLYLPTLNADIIDNGVVKGDSGYILTFGGVMIAISVVQVICNIGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LVAVLPVMLVLVSLIVRRMRPLFRQMQVRLDTVNRVLREQITGNRVIRAFVKDDYEKERFKGANTELTEVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PLEPVRELVRHGHLEIRGAGFKYPGAEASVLRDIALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGADVR
QIDPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVEKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRLETAEATVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671024 OIE60_RS24975 WP_250298194.1 5667104..5668837(-) (rcrP) [Streptomyces sp. NBC_01766]
GTGCTCATACAACTCCTGCGGACGTACCTGCGTCCGTACAAGAAACCGATGGCCCTGCTGGCGCTGCTTCAGCTGTTCCA
GACCTGCGCCACCCTCTACCTGCCGACTCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGACCTTCGGTGGCGTCATGATCGCCATCAGCGTGGTCCAGGTGATCTGCAACATCGGCGCCGTCTACTTCGGTGCG
CGGACGGCCTCCGCCCTCGGCCGGGACATCCGTGCCGGGGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
GCACTTCGGGGCGCCGTCCCTCATCACCCGCACCACCAATGACGTCCAGCAGATCCAGATGCTGGTGCTGATGTCGTTCA
CGCTGATGGCTTCGGCGCCGATCATGTGTGTGGGCGCCATCGTCCTGGCGCTCGGACAGGACGTACCGCTCTCGCTCGTC
CTGGTCGCGGTCCTCCCGGTCATGCTCGTCCTGGTCTCCCTGATCGTCCGGCGCATGCGCCCGCTCTTCCGGCAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTCAAGGACG
ACTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGAGCTGACCGAGGTCTCCCTGGGGACCGCGCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACCGTGGTGAACGTCTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
GGCCATGCAGATCGGGGCGCTGACCGCGTTCCTCTCGTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTCTGTGCCGAGCGGATCCAGGAGGTGCTCGGCACCGAGTCCAGCGTGGTGCCG
CCGCTGGAGCCGGTGCGGGAACTGGTCAGGCACGGCCATCTGGAGATCCGGGGGGCCGGTTTCAAGTACCCGGGCGCCGA
GGCTTCGGTGCTGCGGGACATCGCCCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGATCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTGGTGCCGCGGCTGTTCGACGCCACCGGCGGCGAGGTGCTGGTGGACGGCGCGGACGTACGG
CAGATCGATCCCACGCTACTGGCGAAGACCGTGTCGCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACCGTCGCGAC
GAACCTGCGGTACGGAAACCCGGACGCGACCGATGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGACTTCG
TGGAGAAGCTGGAGGGCGGGCTGGACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCCAGGACGCTGGTCCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCACTGGACTACGCGACGGA
CGCGGCGCTGCGGACCGCGCTGCGGCTGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCGCAGCGCGTCTCCACCATCC
GCGACGCGGACCGGATCGTCGTGATGGACGAGGGCCGGGTGGTCGGAACCGGCCGCCATCACGAGTTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.925

100

0.414