Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA72_RS03990 Genome accession   NZ_CP094714
Coordinates   885468..886184 (-) Length   238 a.a.
NCBI ID   WP_126496535.1    Uniprot ID   -
Organism   Staphylococcus schleiferi strain IVB6176     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 880468..891184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA72_RS03970 (MUA72_03960) - 881259..881897 (+) 639 WP_016425580.1 redox-sensing transcriptional repressor Rex -
  MUA72_RS03975 (MUA72_03965) - 882193..883275 (+) 1083 WP_167732716.1 YeeE/YedE family protein -
  MUA72_RS03980 (MUA72_03970) - 883300..883524 (+) 225 WP_016425578.1 sulfurtransferase TusA family protein -
  MUA72_RS03985 (MUA72_03975) - 883923..885410 (+) 1488 WP_016425577.1 sucrose-6-phosphate hydrolase -
  MUA72_RS03990 (MUA72_03980) agrA 885468..886184 (-) 717 WP_126496535.1 quorum-sensing response regulator AgrA Regulator
  MUA72_RS03995 (MUA72_03985) agrC 886199..887491 (-) 1293 WP_016425575.1 quorum-sensing sensor histidine kinase AgrC -
  MUA72_RS04000 (MUA72_03990) agrD 887515..887652 (-) 138 WP_016425574.1 cyclic lactone autoinducer peptide AgrD -
  MUA72_RS04005 (MUA72_03995) - 887655..888221 (-) 567 WP_167732715.1 accessory gene regulator AgrB -
  MUA72_RS12330 - 888628..888708 (+) 81 WP_154840309.1 delta-lysin family phenol-soluble modulin -
  MUA72_RS04010 (MUA72_04000) - 888950..889753 (-) 804 WP_016425572.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27958.01 Da        Isoelectric Point: 4.9797

>NTDB_id=671022 MUA72_RS03990 WP_126496535.1 885468..886184(-) (agrA) [Staphylococcus schleiferi strain IVB6176]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIEIATDNPYEVLEASKNMSDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHTELTYLTFVYKVAAMDFIFKDDPEELRTRIVDCLETALKRLDLLTKDKTVETLELKRGSNSVYVQYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQIDDRFFRCHNSFVLNRHNISSVDSKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=671022 MUA72_RS03990 WP_126496535.1 885468..886184(-) (agrA) [Staphylococcus schleiferi strain IVB6176]
ATGAAAATATTGATTTGTGAAGACGATCCAAAACAACGTGAGCGCATGGTATCCATTATTGAGAACTATATCATGATTGA
AGAAAAACCTATGGAAATCGAAATTGCTACAGATAATCCATATGAAGTGTTAGAAGCTTCTAAAAACATGAGTGATATTG
GCTGTTATTTTCTAGATATCCAATTAGAATCTGATATTAACGGGATTAAACTCGGAAGTGAGATTCGTAAGCATGACCCT
GTTGGTAATATCATTTTTGTAACAAGCCATACAGAATTGACTTATTTGACATTTGTGTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGACGATCCTGAAGAATTACGTACACGAATTGTTGATTGTTTAGAAACTGCATTAAAACGCTTAGATTTAT
TAACGAAAGATAAAACTGTTGAAACGTTAGAACTGAAACGCGGCAGCAATTCTGTTTATGTTCAATATGATGATGTGATG
TTTTTTGAATCATCACCTAAATCACATCGTTTGATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGCAATCTTAA
AGAATTAGCGCAAATTGATGATCGCTTTTTTAGATGTCATAATAGTTTTGTACTCAACAGACATAACATAAGTAGTGTAG
ATTCTAAAGAACGCATTGCATATTTTAAAAATGAAGAGTTTTGTTATGTTTCAGTACGTAATTTAAAGAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.134

100

0.861