Detailed information NTG0671015

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OIE60_RS20285
• Genome accession: NZ_CP109118
• Coordinates: 4645723..4646703 (+)
• Length: 326 a.a.
• NCBI ID: WP_250301818.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01766
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4640723..4651703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIE60_RS20260 (OIE60_20275)	-	4641114..4641761 (+)	648	WP_250301813.1	TetR/AcrR family transcriptional regulator	-
OIE60_RS20265 (OIE60_20280)	-	4641864..4643432 (+)	1569	WP_326694689.1	MFS transporter	-
OIE60_RS20270 (OIE60_20285)	-	4643493..4644083 (-)	591	WP_250301815.1	MarR family transcriptional regulator	-
OIE60_RS20275 (OIE60_20290)	-	4644179..4644958 (+)	780	WP_250301816.1	class III extradiol ring-cleavage dioxygenase	-
OIE60_RS20280 (OIE60_20295)	-	4644992..4645540 (-)	549	WP_250301817.1	GNAT family N-acetyltransferase	-
OIE60_RS20285 (OIE60_20300)	rpoS	4645723..4646703 (+)	981	WP_250301818.1	sigma-70 family RNA polymerase sigma factor	Regulator
OIE60_RS20290 (OIE60_20305)	-	4646863..4648425 (-)	1563	WP_326694690.1	MFS transporter	-
OIE60_RS20295 (OIE60_20310)	-	4648488..4649453 (+)	966	WP_250301820.1	WYL domain-containing protein	-
OIE60_RS20300 (OIE60_20315)	-	4649521..4650267 (-)	747	WP_250301821.1	DUF6227 family protein	-
OIE60_RS20305 (OIE60_20320)	-	4650430..4651542 (-)	1113	WP_266642563.1	P1 family peptidase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36381.09 Da
• Isoelectric Point: 5.0295

>NTDB_id=671015 OIE60_RS20285 WP_250301818.1 4645723..4646703(+) (rpoS) [Streptomyces sp. NBC_01766]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQVLDGSVQSEAGGASREEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHSEIAAELDAKPERISDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGKLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide

• Length: 981 bp

>NTDB_id=671015 OIE60_RS20285 WP_250301818.1 4645723..4646703(+) (rpoS) [Streptomyces sp. NBC_01766]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGACAGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCACTGCTCGACGCCGCAAAGGAGGTCGAGCTGTCTCAGACCA
TCGAGGCGGGGGTGTACGCCCAGCAGGTGCTCGACGGTTCCGTGCAGAGCGAGGCGGGCGGGGCCTCGCGTGAGGAACTG
GAGGCGCTGGTCGCCGCGGGAGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGCGACTGGTCGTCGCTGTCGCCCG
CCGCTATCCGCGAGCCGGGCTGCCGCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGGTCCATAGCCGAC
CAGTCCCGGACCATCCGGCTCCCTGTCCACCTGGTGGAGGAACTGGGCCGTATCCGCCGGGTCCAGCGGGAGTTCAACCG
TGAGCACGGCCGGGACCCGGAGCACTCGGAGATCGCGGCCGAGCTGGACGCCAAGCCGGAGCGGATCAGCGATGTCCTCG
ACTGGGCCCGCGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACACAGTTCGGTGACCTCCTGGAGGAC
ACCTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAAGAGCTGGACGAACTGATCGGCAAGCTCGA
CCACCGCACGGCCTCGATCATCAAGATGCGGTTCGGCATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGCCTGACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTGCTCGAACTCAAGAAGATGGCCGACGACGTG
GGCTTCGACGCTGCGGCGTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (27-60)

• Sigma-70 region 3 (Sigma70_r3) (173-249)

• Sigma-70, region 4 (Sigma70_r4) (263-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.333	92.025	0.362