Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OIE60_RS03040 Genome accession   NZ_CP109118
Coordinates   722158..723192 (+) Length   344 a.a.
NCBI ID   WP_266645840.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01766     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 717158..728192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE60_RS03025 (OIE60_03030) - 717555..719192 (-) 1638 WP_250302898.1 ABC-F family ATP-binding cassette domain-containing protein -
  OIE60_RS03030 (OIE60_03035) - 719276..720316 (+) 1041 WP_326693631.1 FAD-dependent oxidoreductase -
  OIE60_RS03035 (OIE60_03040) - 720476..721990 (+) 1515 WP_250302894.1 M1 family metallopeptidase -
  OIE60_RS03040 (OIE60_03045) cytR 722158..723192 (+) 1035 WP_266645840.1 LacI family DNA-binding transcriptional regulator Regulator
  OIE60_RS03045 (OIE60_03050) - 723155..724045 (-) 891 WP_250302891.1 oxygenase MpaB family protein -
  OIE60_RS03050 (OIE60_03055) - 724405..725379 (+) 975 WP_326693632.1 oxygenase MpaB family protein -
  OIE60_RS03055 (OIE60_03060) - 725357..725992 (-) 636 WP_250302889.1 TetR/AcrR family transcriptional regulator -
  OIE60_RS03060 (OIE60_03065) - 726137..726892 (+) 756 WP_250302887.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36798.79 Da        Isoelectric Point: 5.1103

>NTDB_id=670974 OIE60_RS03040 WP_266645840.1 722158..723192(+) (cytR) [Streptomyces sp. NBC_01766]
MPDPIPGSRPTLEAVAARAGVSRATASRVVNGGAGVRQLLVERVQEAVDELGYIPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGSGDYDRVARYLAGGHVDGALAFSLHTEDPLPAVIHKAGIPAVFGGRPV
WKGPESDLALPYADCDNRGGARQAVQHLVGLGRRSIAHIAGPQDQTSGIDRLDGYRDVLLDVDPGLTAQGAFTEESGAAA
MAELLERRPELDAVFAANDLMASGALQVLRSHGRRVPEDVAVVGFDNMEKVAELTDPPLTTIRQDIEGMGQLMVRMLIRG
LDRETVTPPDSVIMPTDLVRRASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=670974 OIE60_RS03040 WP_266645840.1 722158..723192(+) (cytR) [Streptomyces sp. NBC_01766]
GTGCCCGATCCGATCCCCGGCTCCCGTCCGACCCTGGAGGCCGTAGCGGCCCGCGCGGGTGTGTCCCGGGCGACCGCGTC
GCGCGTCGTCAACGGCGGCGCCGGGGTGCGGCAGTTGCTGGTCGAACGGGTCCAGGAGGCCGTCGACGAGCTGGGCTACA
TCCCCAATCACGCGGCCAGGACACTGGTCACCCGGCGCAACGGCGCGGTGGCCGTGATCATCGCGGAGCCCGAGATCCGG
ATCTTCTCGGACCCGTTCTTCTCCCAGCAGCTGCGCGGCATAAGCCGCGAACTGACGGCGCACGACTCGCAGTTGGTCCT
GCTCCTCGTGGAGGGAAGCGGCGACTACGACCGGGTCGCCCGCTATCTCGCCGGCGGCCATGTGGACGGCGCGCTGGCGT
TCTCGCTGCACACCGAGGATCCGCTGCCCGCCGTCATCCACAAGGCCGGGATCCCGGCGGTGTTCGGCGGCCGTCCGGTG
TGGAAGGGCCCGGAGTCGGACCTCGCCCTGCCGTACGCCGACTGCGACAACCGGGGCGGCGCCCGCCAGGCCGTACAGCA
CCTGGTCGGGCTCGGGCGCCGCAGCATCGCGCACATCGCGGGCCCCCAGGACCAGACCTCCGGCATCGACCGGCTGGACG
GGTACCGGGACGTGCTGCTGGACGTCGATCCGGGGCTCACCGCCCAGGGCGCCTTCACCGAGGAGAGCGGAGCCGCGGCC
ATGGCCGAACTGCTGGAGCGCCGGCCGGAACTGGACGCCGTGTTCGCGGCCAACGACCTGATGGCGTCCGGCGCGCTCCA
GGTGCTGCGGAGCCACGGCCGGCGGGTGCCGGAGGACGTGGCGGTGGTCGGCTTCGACAACATGGAGAAGGTCGCGGAAC
TCACCGACCCTCCACTGACGACGATCCGTCAGGACATCGAGGGCATGGGGCAGTTGATGGTGCGGATGCTGATCCGCGGC
CTGGACCGGGAGACCGTCACCCCGCCGGATTCAGTGATCATGCCGACGGATCTGGTGCGCCGGGCGTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.023

100

0.363