Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OG902_RS40405 Genome accession   NZ_CP109115
Coordinates   8977881..8978240 (+) Length   119 a.a.
NCBI ID   WP_266488452.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01768     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8972881..8983240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG902_RS40375 (OG902_40355) - 8973287..8973709 (+) 423 WP_124720391.1 cupin domain-containing protein -
  OG902_RS40380 (OG902_40360) - 8973834..8974202 (+) 369 WP_266488459.1 alcohol dehydrogenase catalytic domain-containing protein -
  OG902_RS40385 (OG902_40365) - 8974287..8975450 (+) 1164 WP_326742944.1 epoxide hydrolase -
  OG902_RS40390 (OG902_40370) - 8975550..8975948 (-) 399 WP_326742945.1 hypothetical protein -
  OG902_RS40395 (OG902_40375) - 8976217..8976753 (+) 537 WP_124720388.1 hypothetical protein -
  OG902_RS40400 (OG902_40380) - 8976829..8977884 (+) 1056 WP_266488454.1 HAMP domain-containing protein -
  OG902_RS40405 (OG902_40385) micB 8977881..8978240 (+) 360 WP_266488452.1 ATP-binding protein Regulator
  OG902_RS40410 (OG902_40390) - 8978250..8978699 (+) 450 WP_124720387.1 NUDIX hydrolase -
  OG902_RS40415 (OG902_40395) - 8978762..8978863 (+) 102 Protein_7989 transcriptional regulator -
  OG902_RS40420 (OG902_40400) - 8978860..8979246 (+) 387 WP_124720386.1 VOC family protein -
  OG902_RS40425 (OG902_40405) - 8979599..8979991 (+) 393 WP_124720385.1 SAV_915 family protein -
  OG902_RS40430 (OG902_40410) lysA 8980003..8981376 (+) 1374 WP_124720384.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12848.48 Da        Isoelectric Point: 9.4596

>NTDB_id=670967 OG902_RS40405 WP_266488452.1 8977881..8978240(+) (micB) [Streptomyces sp. NBC_01768]
MSGDEDALARVVRNLLDNALRHAATRIDVSLRTLHGTARLVVADDGPGIPGADRERVFDRFTRLDDARARDTGGSGLGLA
IVRDIVTAHHGSTHIEDNRPGTRLIVVLPVEGRIARASR

Nucleotide


Download         Length: 360 bp        

>NTDB_id=670967 OG902_RS40405 WP_266488452.1 8977881..8978240(+) (micB) [Streptomyces sp. NBC_01768]
GTGAGCGGGGACGAGGACGCCCTCGCCCGAGTTGTGCGCAACCTCCTGGACAACGCGCTGCGCCATGCCGCGACCCGCAT
CGACGTCAGCCTCCGTACCCTGCACGGCACCGCACGACTGGTCGTCGCCGACGACGGCCCCGGTATCCCCGGGGCGGACC
GGGAGCGCGTCTTCGACCGGTTCACCCGCCTGGACGACGCCCGCGCCCGGGACACCGGCGGCAGCGGGCTCGGCCTCGCC
ATCGTCCGCGACATCGTCACGGCCCACCACGGCAGCACCCACATCGAGGACAACCGGCCGGGCACCCGGCTGATCGTCGT
GCTGCCGGTCGAGGGGCGGATCGCGCGGGCGTCCCGGTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

37.719

95.798

0.361