Detailed information NTG0067091

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R30_RS04795
• Genome accession: NZ_AP022245
• Coordinates: 995892..996884 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP8-S18-CRE-02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 990892..1001884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R30_RS04765 (WP8S18C02_09410)	ispD	990953..991663 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R30_RS04770 (WP8S18C02_09420)	ispF	991663..992142 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R30_RS04775 (WP8S18C02_09430)	truD	992139..993188 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H7R30_RS04780 (WP8S18C02_09440)	surE	993169..993930 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R30_RS04785 (WP8S18C02_09450)	pcm	993924..994550 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R30_RS04790 (WP8S18C02_09460)	nlpD	994735..995829 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H7R30_RS04795 (WP8S18C02_09470)	rpoS	995892..996884 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R30_RS04800 (WP8S18C02_09480)	ygbN	996978..998342 (-)	1365	WP_021547117.1	GntP family transporter	-
H7R30_RS04805 (WP8S18C02_09490)	ygbM	998431..999207 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
H7R30_RS04810 (WP8S18C02_09500)	ygbL	999212..999850 (-)	639	WP_001278994.1	aldolase	-
H7R30_RS04815 (WP8S18C02_09510)	otnK	999847..1000995 (-)	1149	WP_250559827.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=67091 H7R30_RS04795 WP_000081550.1 995892..996884(+) (rpoS) [Escherichia coli strain WP8-S18-CRE-02]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=67091 H7R30_RS04795 WP_000081550.1 995892..996884(+) (rpoS) [Escherichia coli strain WP8-S18-CRE-02]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715