Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AST72_RS05295 Genome accession   NZ_AP014856
Coordinates   1049071..1049700 (+) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain CB9786     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044071..1054700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AST72_RS05270 (EACBF_0977) - 1044463..1046223 (-) 1761 WP_095575635.1 AAA family ATPase -
  AST72_RS05275 (EACBF_0978) matP 1046409..1046861 (+) 453 WP_059219816.1 macrodomain Ter protein MatP -
  AST72_RS05280 (EACBF_0979) ompA 1046936..1047988 (-) 1053 WP_024164823.1 porin OmpA -
  AST72_RS05290 (EACBF_0980) sulA 1048344..1048853 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  AST72_RS05295 (EACBF_0981) sxy/tfoX 1049071..1049700 (+) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  AST72_RS05300 (EACBF_0982) yccS 1049660..1051825 (-) 2166 WP_072248637.1 YccS family putative transporter -
  AST72_RS05305 (EACBF_0983) - 1051835..1052281 (-) 447 WP_001261228.1 YccF domain-containing protein -
  AST72_RS05310 (EACBF_0984) helD 1052404..1054458 (+) 2055 WP_095575636.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=67088 AST72_RS05295 WP_059219814.1 1049071..1049700(+) (sxy/tfoX) [Escherichia albertii strain CB9786]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=67088 AST72_RS05295 WP_059219814.1 1049071..1049700(+) (sxy/tfoX) [Escherichia albertii strain CB9786]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895

Multiple sequence alignment