Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB04_RS28645 Genome accession   NZ_CP109104
Coordinates   6442982..6444715 (-) Length   577 a.a.
NCBI ID   WP_326690527.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6437982..6449715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB04_RS28630 (OHB04_28650) - 6438490..6439812 (+) 1323 WP_326690524.1 RNA polymerase sigma factor -
  OHB04_RS28635 (OHB04_28655) - 6440062..6440868 (+) 807 WP_326690525.1 serine protease -
  OHB04_RS28640 (OHB04_28660) rcrQ 6441063..6442985 (-) 1923 WP_326690526.1 ABC transporter ATP-binding protein Regulator
  OHB04_RS28645 (OHB04_28665) rcrP 6442982..6444715 (-) 1734 WP_326690527.1 ABC transporter ATP-binding protein Regulator
  OHB04_RS28650 (OHB04_28670) - 6444902..6446311 (-) 1410 WP_326690528.1 FGGY family carbohydrate kinase -
  OHB04_RS28655 (OHB04_28675) - 6446507..6447691 (+) 1185 WP_326692953.1 MalY/PatB family protein -
  OHB04_RS28660 (OHB04_28680) - 6447782..6448309 (-) 528 WP_326690529.1 hypothetical protein -
  OHB04_RS28665 (OHB04_28685) - 6448537..6449070 (-) 534 WP_326690530.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63008.15 Da        Isoelectric Point: 5.7296

>NTDB_id=670868 OHB04_RS28645 WP_326690527.1 6442982..6444715(-) (rcrP) [Streptomyces sp. NBC_01775]
MLIRLLRARLRPYKQPIALLVLMQLIQTCATLYLPTLNADIIDHGVVKGDTGYILRYGSLMLAVSVVQVVCNIAAVFLGA
RTAAALGRDIRAHVFDRVQAFSAREVGQFGAPSLITRTTNDVLQVQMVTLMAFTLMVTAPIMCFGGIFMALGQDVPLSAV
LLGVVPVLGIAVGLIVRRMRPLFRTMQERLDNVNRVLREQITGVRVIRAFVKDEYERRRFHEANSGLTDVQLRTGQLMAL
MFPVVMTVVNISSVVVVWFGARRIDSGDIEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PADPVRTLRRHGQLELRGAGFGYPGAEVPVLHDISLLARPGETTAVIGSTGSGKSSLLGLVPRLFDATAGQVLVDGEDVR
TLDPDLLASTVGLVPQRPYLFSGTVASNLRYGRPEASDEELWQALEVAQAKDFVERMDGGLEAEISQGGSNVSGGQRQRL
AIARVLVHRPEIYLFDDSFSALDYATDAALRSALARETAEATVVIVAQRVSTIRDADRILVLDEGRVAGVGGHHELMEDN
ETYREIVLSQLTESEAS

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=670868 OHB04_RS28645 WP_326690527.1 6442982..6444715(-) (rcrP) [Streptomyces sp. NBC_01775]
GTGCTGATCCGCCTTCTCCGCGCCCGGCTGCGCCCGTACAAGCAGCCGATCGCGCTTCTCGTACTGATGCAGCTCATACA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCCGACATCATCGACCACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGCGCTACGGCAGCCTGATGCTGGCCGTCTCCGTGGTGCAGGTCGTCTGCAACATCGCCGCGGTGTTCCTCGGGGCC
CGCACCGCCGCCGCGCTGGGACGCGACATCCGCGCGCACGTCTTCGACCGGGTGCAGGCGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCCCCGTCACTGATCACCCGCACCACCAATGACGTGCTCCAGGTGCAGATGGTGACGCTGATGGCCTTCA
CGCTGATGGTCACGGCGCCGATCATGTGCTTCGGCGGCATCTTCATGGCGCTCGGCCAGGACGTACCGCTCTCGGCCGTG
CTCCTGGGCGTGGTGCCCGTGCTGGGTATCGCGGTCGGTCTGATCGTCCGCCGTATGCGCCCGCTCTTCCGCACCATGCA
GGAGCGGCTGGACAACGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTGTCCGTGTCATCCGCGCCTTCGTCAAGGACG
AGTACGAGCGCCGCCGCTTCCACGAGGCCAACAGCGGCCTGACCGATGTGCAGTTGCGCACCGGGCAGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTCGTGAACATATCCAGCGTCGTCGTGGTCTGGTTCGGCGCGCGCCGTATCGACAGCGG
CGACATCGAGATCGGCGCCCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAAGTGCTGGACACCGACTCCAGCGTCGTACCG
CCCGCGGACCCGGTGCGTACGCTGCGCCGGCACGGGCAACTGGAGCTGCGCGGGGCCGGGTTCGGATACCCCGGCGCCGA
GGTGCCCGTCCTCCACGACATAAGCCTGCTGGCGCGGCCGGGCGAGACCACGGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCCTCCCTGCTGGGCCTGGTGCCACGGCTGTTCGACGCGACGGCCGGGCAGGTCCTGGTGGACGGCGAGGACGTGCGC
ACCCTCGACCCCGACCTCCTCGCGAGCACGGTCGGGCTCGTGCCGCAGCGCCCGTACCTCTTCTCCGGCACCGTCGCCTC
CAACCTGCGCTACGGCCGCCCCGAGGCGAGCGACGAGGAGCTGTGGCAGGCCCTGGAGGTCGCCCAGGCCAAGGACTTCG
TCGAGCGGATGGACGGCGGGCTGGAGGCGGAGATCTCCCAGGGCGGCAGCAACGTCTCCGGCGGCCAGCGGCAGCGGCTG
GCGATAGCGCGAGTGCTGGTGCACCGGCCCGAGATCTACCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCCTTGCGCTCCGCGCTCGCCCGGGAGACGGCGGAGGCGACGGTCGTCATCGTCGCGCAGCGCGTGTCCACCATCC
GGGACGCCGACCGCATCCTCGTGCTCGACGAGGGCCGCGTCGCGGGCGTCGGGGGGCACCACGAGCTGATGGAGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACCGAAAGTGAGGCCTCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

100

0.399