Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB04_RS28640 Genome accession   NZ_CP109104
Coordinates   6441063..6442985 (-) Length   640 a.a.
NCBI ID   WP_326690526.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6436063..6447985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB04_RS28630 (OHB04_28650) - 6438490..6439812 (+) 1323 WP_326690524.1 RNA polymerase sigma factor -
  OHB04_RS28635 (OHB04_28655) - 6440062..6440868 (+) 807 WP_326690525.1 serine protease -
  OHB04_RS28640 (OHB04_28660) rcrQ 6441063..6442985 (-) 1923 WP_326690526.1 ABC transporter ATP-binding protein Regulator
  OHB04_RS28645 (OHB04_28665) rcrP 6442982..6444715 (-) 1734 WP_326690527.1 ABC transporter ATP-binding protein Regulator
  OHB04_RS28650 (OHB04_28670) - 6444902..6446311 (-) 1410 WP_326690528.1 FGGY family carbohydrate kinase -
  OHB04_RS28655 (OHB04_28675) - 6446507..6447691 (+) 1185 WP_326692953.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68940.21 Da        Isoelectric Point: 5.0553

>NTDB_id=670867 OHB04_RS28640 WP_326690526.1 6441063..6442985(-) (rcrQ) [Streptomyces sp. NBC_01775]
MSGPGGMAGAPHQRSMDFKGSGKRLLAQFKPERAWLLVMLLVVVVSVGLSVLGPKILGHATDLIFGGFIGQKLPAGLTKE
QALEGLRHKGQGGMADMLSGMDFTPGHGIDFGAIGEVLLVVAAVYTAAGLLMLWAGRISARAIANTVFRLREQVEAKLSK
LPLSYLDKQSRGEVLSRVTNDIDNLGQTLQQTLGQLVNSLLTIVGVLAVMFWISPLLALVALVTVPLSALVATRVGKRAQ
PQFVQQWKSTGKLNAHIEEMYTGHALVKVFGRQRESAEVFAEQNDALYKAGFKAQFISGIMQPAMMFVGNLNYVLVAVVG
GLRVASGNLSIGDVQAFVQYSRQFSQPLTQVASMANLIQSGVASAERVFDILDAEEQSPEPDKAHAERPSEALGRVELKN
VSFRYTEDKPLIEDLSLAVEPGQTVAIVGPTGAGKTTLVNLLLRFYEVREGRILLDGTDIAAMDREELREGIGMVLQDTW
LFGGTIAENIAYGAQGATREQVEEAARAAHADRFIRTLPDGYETVLDDEGTGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQRAMERLASERTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEALLDADGAYAGLYKAQFAEAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=670867 OHB04_RS28640 WP_326690526.1 6441063..6442985(-) (rcrQ) [Streptomyces sp. NBC_01775]
ATGAGCGGGCCAGGGGGAATGGCGGGGGCGCCGCACCAGCGGTCGATGGACTTCAAGGGCTCGGGAAAGCGGCTGCTGGC
CCAGTTCAAGCCGGAGCGCGCCTGGCTGCTGGTGATGCTGCTGGTCGTGGTCGTCAGCGTCGGCCTGAGCGTGCTCGGGC
CCAAGATCCTCGGCCATGCGACCGACCTGATCTTCGGGGGGTTCATCGGGCAGAAGCTGCCGGCCGGCCTCACCAAGGAA
CAGGCCCTGGAGGGGCTGCGCCACAAGGGGCAAGGCGGCATGGCCGACATGCTCTCCGGTATGGACTTCACCCCGGGCCA
CGGCATCGACTTCGGCGCGATCGGCGAGGTGCTGCTGGTCGTGGCCGCCGTCTACACGGCAGCCGGGCTGCTGATGCTGT
GGGCGGGACGGATCTCGGCCCGCGCGATCGCCAACACCGTCTTCCGGCTGCGCGAGCAGGTCGAGGCGAAGCTGTCGAAG
CTGCCGCTGTCCTACCTGGACAAGCAGTCGCGCGGCGAGGTGCTCTCCCGGGTCACCAACGACATCGACAACCTCGGGCA
GACGCTCCAGCAGACCTTGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTCGGCGTGCTGGCCGTGATGTTCTGGATCT
CGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGGCGCTGGTCGCCACCCGGGTGGGCAAGCGGGCCCAG
CCCCAGTTCGTGCAGCAGTGGAAGTCGACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGACACGCCCTGGT
GAAGGTCTTCGGGCGGCAGCGCGAGTCGGCCGAGGTCTTCGCCGAGCAGAACGACGCCCTCTACAAGGCCGGGTTCAAGG
CGCAGTTCATCAGCGGGATCATGCAGCCCGCGATGATGTTCGTGGGCAACCTCAACTACGTCCTCGTCGCCGTGGTCGGC
GGACTGCGGGTCGCCTCGGGCAACCTGTCGATCGGTGACGTCCAGGCGTTCGTGCAGTACTCACGGCAGTTCAGCCAGCC
GCTCACCCAGGTCGCGTCGATGGCGAACCTGATCCAGTCCGGAGTGGCCTCGGCCGAGCGGGTCTTCGACATCCTCGACG
CGGAGGAGCAGTCCCCCGAGCCGGACAAGGCGCACGCCGAGCGGCCGTCCGAGGCGCTGGGCCGGGTGGAGCTGAAGAAC
GTCTCGTTCCGCTACACCGAGGACAAGCCGCTGATCGAGGACCTGTCACTGGCGGTCGAACCCGGTCAGACGGTGGCCAT
CGTCGGCCCCACAGGGGCGGGCAAGACCACCCTGGTCAACCTGCTGCTGCGGTTCTACGAGGTGCGCGAGGGCCGCATTC
TGCTGGACGGCACCGACATCGCCGCCATGGACCGCGAGGAGTTGCGCGAGGGCATCGGGATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCCGAGAACATCGCCTACGGGGCGCAAGGTGCCACGCGCGAGCAGGTGGAGGAGGCCGCGCG
CGCCGCGCACGCCGACCGCTTCATCCGCACGCTCCCCGACGGCTACGAGACGGTGCTGGACGACGAGGGCACCGGGGTGA
GCGCGGGCGAGAAGCAGCTCATCACGATAGCCCGAGCGTTCTTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCGACC
AGCTCGGTGGACACCAGGACCGAGGTCCTCATCCAGCGCGCGATGGAGCGCCTGGCCTCCGAGCGCACCAGCTTCGTGAT
CGCCCACCGCCTCTCCACGATCCGGGACGCGGACGTGATCTTGGTGATGGAGAACGGCTCGATCGTCGAACAGGGCACCC
ATGAGGCCCTGCTGGACGCGGACGGCGCGTACGCGGGCCTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCGGAGGTGGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(37-348)

ABC transporter (ABC_tran)

(413-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.165

96.719

0.408