Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OIE49_RS34305 Genome accession   NZ_CP109090
Coordinates   7710588..7711523 (+) Length   311 a.a.
NCBI ID   WP_326806411.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 7705588..7716523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS34290 (OIE49_34330) - 7706753..7708270 (-) 1518 WP_326805693.1 hypothetical protein -
  OIE49_RS34295 (OIE49_34335) - 7708445..7709803 (-) 1359 WP_326805694.1 GAF domain-containing SpoIIE family protein phosphatase -
  OIE49_RS34300 (OIE49_34340) - 7710012..7710344 (+) 333 WP_326805695.1 cupin domain-containing protein -
  OIE49_RS34305 (OIE49_34345) rpoS 7710588..7711523 (+) 936 WP_326806411.1 sigma-70 family RNA polymerase sigma factor Regulator
  OIE49_RS34310 (OIE49_34350) - 7711607..7711777 (-) 171 WP_326805696.1 hydrophobic protein -
  OIE49_RS34315 (OIE49_34355) - 7711978..7713051 (+) 1074 WP_326805697.1 NAD(+)/NADH kinase -
  OIE49_RS34320 (OIE49_34360) - 7713080..7714180 (-) 1101 WP_326805698.1 PP2C family protein-serine/threonine phosphatase -
  OIE49_RS34325 (OIE49_34365) - 7714420..7715787 (-) 1368 WP_326805699.1 endo-1,4-beta-xylanase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35120.06 Da        Isoelectric Point: 5.8118

>NTDB_id=670808 OIE49_RS34305 WP_326806411.1 7710588..7711523(+) (rpoS) [Streptomyces sp. NBC_01788]
MPELDGEPDLLGQYLRQIGATPLLDAEGEVRLARRIEAGLQATEELNQADEGGRELAPERRRELEAALRVGQEAKDHMVR
ANLRLVVAMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATWWIRQAMERGLATHARSVRLPMHVVEQLQ
KLAKIERKLQLRLEHQPTVEEVAGESGLAEDKVVWLRRVGRQVISLDMPVDDTGETVVGDLIPDTEVLQAPEVAEYQALA
EELREAVDTLAPREALILSLRYGLHDGHQRTLHEVAQHVGLTRERVRQLEKQSLAQLREQEPGERLLAWAS

Nucleotide


Download         Length: 936 bp        

>NTDB_id=670808 OIE49_RS34305 WP_326806411.1 7710588..7711523(+) (rpoS) [Streptomyces sp. NBC_01788]
ATGCCCGAACTCGACGGCGAACCCGATCTGCTCGGCCAGTACCTGCGCCAGATCGGCGCCACACCGCTGCTCGACGCGGA
GGGCGAGGTGCGCCTCGCCCGGCGCATCGAAGCCGGTCTGCAAGCCACCGAGGAACTGAACCAGGCCGACGAGGGCGGCC
GTGAACTCGCGCCGGAGCGGCGGCGGGAACTGGAGGCCGCCCTGCGGGTCGGCCAGGAGGCCAAGGACCACATGGTGCGG
GCCAACCTCCGGCTCGTCGTGGCCATGGCCAAACGGCACGCACACCGCGGGCTGCCACTGCTCGACGTCATCCAGGAGGG
CAACCTGGGGCTCATCCGGGCCGTGGAGAAGTTCGACCACACCAAGGGGTTCAAGTTCTCCACCTACGCCACCTGGTGGA
TCCGCCAGGCCATGGAACGCGGCCTCGCCACGCACGCGCGTTCCGTGCGGCTGCCGATGCATGTCGTGGAGCAGCTGCAG
AAGCTCGCCAAGATCGAGCGCAAGCTGCAGCTGCGCCTCGAACACCAGCCGACCGTCGAGGAGGTCGCCGGCGAGAGCGG
CCTCGCCGAGGACAAGGTCGTCTGGCTGCGCCGCGTCGGCCGACAGGTGATCAGCCTGGACATGCCGGTGGACGACACCG
GAGAGACCGTGGTCGGCGACCTCATCCCCGACACGGAGGTGCTGCAGGCCCCCGAGGTCGCCGAGTACCAGGCGCTGGCC
GAGGAACTCCGGGAGGCCGTCGACACCCTGGCACCGCGCGAGGCCCTCATCCTCAGCCTGCGATACGGCCTGCACGACGG
TCACCAGCGCACCCTGCACGAGGTCGCCCAGCACGTGGGCCTGACCCGGGAGCGCGTACGCCAGCTGGAGAAGCAGTCAC
TGGCCCAGCTCAGGGAACAGGAGCCGGGCGAACGGCTCCTTGCGTGGGCGAGCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(157-230)

Sigma-70 region 2 (Sigma70_r2)

(78-145)

Sigma-70, region 4 (Sigma70_r4)

(246-299)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(9-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.55

93.569

0.379