Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE49_RS26315 Genome accession   NZ_CP109090
Coordinates   5812232..5813011 (-) Length   259 a.a.
NCBI ID   WP_100570721.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5807232..5818011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS26305 (OIE49_26310) - 5809200..5809940 (+) 741 WP_326804413.1 GNAT family N-acetyltransferase -
  OIE49_RS26310 (OIE49_26315) - 5810086..5812059 (+) 1974 WP_326804414.1 ATP-dependent DNA helicase -
  OIE49_RS26315 (OIE49_26320) dinR/lexA 5812232..5813011 (-) 780 WP_100570721.1 transcriptional repressor LexA Regulator
  OIE49_RS26320 (OIE49_26325) nrdR 5813576..5814130 (+) 555 WP_100570720.1 transcriptional regulator NrdR -
  OIE49_RS26325 (OIE49_26330) - 5814291..5817182 (+) 2892 WP_326804415.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28106.86 Da        Isoelectric Point: 7.0668

>NTDB_id=670798 OIE49_RS26315 WP_100570721.1 5812232..5813011(-) (dinR/lexA) [Streptomyces sp. NBC_01788]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQATALQPTDTVGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQQVAENGDIVAAMIDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=670798 OIE49_RS26315 WP_100570721.1 5812232..5813011(-) (dinR/lexA) [Streptomyces sp. NBC_01788]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCTCCGGGCATCCGGGCGGACAGCTCGGGCCTCA
CCGACCGTCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTATCCGCCGTCGATGCGGGAGATC
GGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCCCTGGAGCGCAAGGGGTTCCTACGGCG
TGATCCGCACCGTCCGCGCGCGTACGAGGTCCGCGGCTCCGACCAGGCCACCGCGTTGCAGCCGACGGACACAGTCGGCA
AGCCGGCCGCCTCGTACGTCCCTCTGGTCGGCCGGATCGCCGCCGGTGGTCCCATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTGCCCCGGCAGCTGGTCGGCGACGGAGAGCTCTTCGTCCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCAGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGATCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCGGGCGACGAAGCGACCATCCTCGGCAAGGTGGTGGCGGTCCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378