Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OIE49_RS19330 Genome accession   NZ_CP109090
Coordinates   4266038..4266637 (+) Length   199 a.a.
NCBI ID   WP_100568436.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4261038..4271637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS19315 (OIE49_19320) - 4262317..4264623 (+) 2307 WP_326803403.1 protein kinase -
  OIE49_RS19320 (OIE49_19325) - 4264630..4265379 (-) 750 WP_326803405.1 SLATT domain-containing protein -
  OIE49_RS19325 (OIE49_19330) - 4265635..4265979 (+) 345 WP_326803406.1 YbaB/EbfC family nucleoid-associated protein -
  OIE49_RS19330 (OIE49_19335) recR 4266038..4266637 (+) 600 WP_100568436.1 recombination mediator RecR Machinery gene
  OIE49_RS19335 (OIE49_19340) - 4266630..4267289 (+) 660 WP_100568437.1 DUF5063 domain-containing protein -
  OIE49_RS19340 (OIE49_19345) - 4267477..4268754 (+) 1278 WP_100568438.1 aspartate kinase -
  OIE49_RS19345 (OIE49_19350) - 4268751..4269851 (+) 1101 WP_326803407.1 aspartate-semialdehyde dehydrogenase -
  OIE49_RS19350 (OIE49_19355) - 4270361..4270936 (+) 576 WP_326806274.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21707.07 Da        Isoelectric Point: 4.9909

>NTDB_id=670774 OIE49_RS19330 WP_100568436.1 4266038..4266637(+) (recR) [Streptomyces sp. NBC_01788]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAQALLEVKAKVRFCATCGNVAQEELCGICRDSRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=670774 OIE49_RS19330 WP_100568436.1 4266038..4266637(+) (recR) [Streptomyces sp. NBC_01788]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTCGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGGCGGACGTACGGCGGCTCGCCCAGGCCCTGCTCGAGGTGAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCGGGATCTGCCGCGACAGCCGCCGCGACCTCTCGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGGGAACTCCTGGCCCGTCTGGCGGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAATCTCGAAGGCGAGGCGACGGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGTGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457