Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OIE54_RS21925 Genome accession   NZ_CP109081
Coordinates   4841282..4842415 (-) Length   377 a.a.
NCBI ID   WP_326651152.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4836282..4847415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE54_RS21915 (OIE54_21895) gyrB 4837867..4839933 (-) 2067 WP_326651154.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OIE54_RS21920 (OIE54_21900) - 4840731..4841285 (-) 555 WP_326651153.1 DciA family protein -
  OIE54_RS21925 (OIE54_21905) recF 4841282..4842415 (-) 1134 WP_326651152.1 DNA replication/repair protein RecF Machinery gene
  OIE54_RS21930 (OIE54_21910) gnd 4842446..4843321 (-) 876 WP_326651151.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OIE54_RS21935 (OIE54_21915) dnaN 4843459..4844589 (-) 1131 WP_326651150.1 DNA polymerase III subunit beta -
  OIE54_RS21940 (OIE54_21920) dnaA 4845428..4847227 (-) 1800 WP_326651149.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40761.46 Da        Isoelectric Point: 6.9260

>NTDB_id=670703 OIE54_RS21925 WP_326651152.1 4841282..4842415(-) (recF) [Streptomyces sp. NBC_01794]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLASHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLSLVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRGMDLSTLDVWDQHLARVGAELLAQRIDLIAAMQPLADKAYEALAPGGGPVALEYRSSSSAGGG
VCAHGRDELYAQLIGALAEVRKQEIERGVTLVGPHRDELVLKLGPLPAKGYASHGESWSYALALRLASYELLRAEGNEPV
LVLDDVFAELDTRRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARFTVADGEVERV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=670703 OIE54_RS21925 WP_326651152.1 4841282..4842415(-) (recF) [Streptomyces sp. NBC_01794]
ATGCACGTCACGCATTTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCACTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCGAACGGGCAGGGCAAGACGAATCTCGTCGAGGCGGTCGGCTATCTCGCGACGCTGGCCAGCCATCGGG
TCTCGTCGGACGCTCCTCTGGTACGGATGGGGGCCGACCGCGCCGTCATCCGGGCCGCCGTCACACAGGGCGAGCGTTCC
CAGCTGATCGAGCTGGAGCTCAACCCAGGGAAGGCGAACCGAGCCCGTATCAACAGGTCTTCACAGGTCAGACCTCGTGA
TGTGCTGGGGATAGTACGGACGGTGCTGTTCGCGCCGGAGGATCTGTCTTTGGTGAAGGGCGATCCGGGCGAGCGGCGAC
GGTTCCTCGACGAGCTGGTCACGGCGCGGTCGCCGCGGATGGCCGGGGTGCGGTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTGCTGAAGTCGGCAGCGATGGCGCGACGGCACGGCGGACGCGGGATGGATCTGTCCACGCTGGATGTGTG
GGACCAGCATCTGGCGCGGGTGGGGGCGGAGCTGCTGGCACAGCGGATCGATCTGATCGCCGCGATGCAGCCGCTGGCGG
ACAAGGCGTACGAGGCGCTGGCACCGGGGGGCGGGCCGGTTGCGCTGGAGTACCGTTCCTCCTCTTCTGCCGGCGGCGGG
GTCTGTGCGCACGGTCGCGACGAGCTGTACGCACAGTTGATCGGCGCGCTTGCGGAGGTGCGCAAGCAGGAGATCGAGCG
GGGTGTGACGCTGGTCGGTCCGCACCGCGATGAGCTGGTGCTCAAGCTGGGGCCGCTGCCGGCGAAGGGGTACGCCAGTC
ATGGCGAGTCCTGGTCCTACGCGCTGGCGCTGCGGCTGGCTTCGTACGAGCTGCTGCGGGCCGAAGGCAATGAGCCGGTG
CTCGTCCTGGATGACGTTTTCGCGGAGCTGGACACGCGGCGTCGGGAGCGGCTCGCGGAACTGGTGGCTCCGGGTGAGCA
GGTGCTGGTGACGGCGGCGGTCGACGACGATGTGCCGGGGGTGCTGGCCGGGGCGCGGTTCACGGTGGCCGACGGGGAGG
TGGAGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.434

100

0.374