Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5I23_RS15590 Genome accession   NZ_CP094682
Coordinates   3153855..3155243 (+) Length   462 a.a.
NCBI ID   WP_055244791.1    Uniprot ID   A0A174PYD4
Organism   Anaerotruncus colihominis strain VE303-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3150395..3162510 3153855..3155243 within 0


Gene organization within MGE regions


Location: 3150395..3162510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5I23_RS15575 (K5I23_15575) - 3150395..3151309 (+) 915 WP_195556377.1 dihydrodipicolinate synthase family protein -
  K5I23_RS15580 (K5I23_15580) - 3151534..3152652 (+) 1119 WP_006875288.1 ABC transporter ATP-binding protein -
  K5I23_RS15585 (K5I23_15585) - 3152817..3153599 (-) 783 WP_242857754.1 N-acetylmuramoyl-L-alanine amidase -
  K5I23_RS15590 (K5I23_15590) radA 3153855..3155243 (+) 1389 WP_055244791.1 DNA repair protein RadA Machinery gene
  K5I23_RS15595 (K5I23_15595) - 3155217..3155396 (-) 180 WP_006875285.1 hypothetical protein -
  K5I23_RS15600 (K5I23_15600) - 3155656..3156741 (+) 1086 WP_024730387.1 efflux RND transporter periplasmic adaptor subunit -
  K5I23_RS15605 (K5I23_15605) - 3156748..3157938 (+) 1191 WP_006875283.1 ABC transporter permease -
  K5I23_RS15610 (K5I23_15610) - 3158086..3159105 (+) 1020 WP_024730389.1 tyrosine recombinase XerC -
  K5I23_RS15615 (K5I23_15615) - 3159091..3159867 (-) 777 WP_024730390.1 hypothetical protein -
  K5I23_RS15620 (K5I23_15620) scfB 3159997..3161376 (-) 1380 WP_024730391.1 thioether cross-link-forming SCIFF peptide maturase -
  K5I23_RS15625 (K5I23_15625) scfA 3161444..3161590 (-) 147 WP_006875279.1 six-cysteine ranthipeptide SCIFF -
  K5I23_RS15630 (K5I23_15630) - 3161746..3162144 (-) 399 WP_024730392.1 TIGR04086 family membrane protein -
  K5I23_RS15635 (K5I23_15635) yajC 3162208..3162510 (-) 303 WP_006875276.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49608.12 Da        Isoelectric Point: 6.8018

>NTDB_id=670668 K5I23_RS15590 WP_055244791.1 3153855..3155243(+) (radA) [Anaerotruncus colihominis strain VE303-02]
MAVTKNKSVYVCQSCGYESVKWYGRCPDCGEWNSLVEEVRQQVAAPKTRAASAAPAVPRAAAQAARLSDISSDDSQRYKT
GVGELDRVLGGGIVAGSVMLLSGDPGIGKSTLLLQICQYLCGGLKILYVSGEESARQLKLRANRLGVESDNLYISATTDV
ENVLETVRKLSPDVVMIDSIQTMNLTALTSSAGSVTQIRECTQVLIGIAKSAEIPVFIVGHVNKDGAIAGPKMLEHMVDA
VLYFEGERHQNYRILRAVKNRYGSTNEIGVFEMGQEGLREVPNPSLMMLSGRPKNVSGTCVACVMEGTRPILAEVQALVS
KTGFGTPRRQAAGFDYNRAALLIAVLEKRGGYFFGTLDAYINVVGGLRLDEPAADLPVAMALVSNLLDKCIPDDLAAFGE
IGLAGEVRSVGSIQQRVSEAYRLGFTTCVIPRHCVSMVDARDMPDLNLIGVQNLSQAIAVIR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=670668 K5I23_RS15590 WP_055244791.1 3153855..3155243(+) (radA) [Anaerotruncus colihominis strain VE303-02]
ATGGCTGTCACAAAAAACAAAAGCGTATATGTCTGCCAGAGCTGCGGTTATGAAAGTGTAAAATGGTACGGACGCTGCCC
GGACTGCGGCGAATGGAATTCACTGGTCGAGGAGGTGCGGCAGCAGGTTGCAGCGCCAAAAACGCGTGCGGCTTCAGCAG
CTCCCGCCGTACCACGTGCCGCAGCACAGGCGGCGCGTCTGTCTGACATATCATCCGATGACAGCCAGCGATATAAGACC
GGGGTCGGGGAGCTTGACCGTGTGCTTGGCGGTGGGATCGTCGCCGGCTCAGTGATGCTGCTTTCCGGAGATCCTGGGAT
CGGTAAATCAACGCTTCTGCTGCAAATCTGTCAGTATCTCTGCGGTGGTTTGAAAATTCTATATGTATCGGGCGAGGAAA
GCGCGCGGCAGCTCAAGCTGCGTGCAAACCGGCTCGGGGTGGAAAGCGACAATCTTTATATTTCGGCTACGACAGATGTC
GAAAATGTTTTGGAAACAGTTCGAAAGCTGTCGCCGGATGTTGTGATGATCGATTCCATTCAAACGATGAATCTTACTGC
GTTAACTTCATCGGCCGGTAGTGTTACTCAGATTCGTGAATGTACGCAAGTTTTGATCGGAATTGCAAAGAGTGCAGAGA
TTCCAGTGTTTATCGTTGGCCATGTCAACAAGGACGGCGCGATCGCCGGGCCAAAGATGCTTGAACACATGGTTGATGCC
GTCCTCTATTTTGAAGGTGAACGCCATCAAAATTACCGAATTTTGCGAGCGGTCAAGAACCGCTATGGTTCCACCAATGA
AATCGGTGTATTTGAAATGGGACAGGAAGGTCTGCGCGAGGTACCGAATCCTTCCTTGATGATGCTTTCAGGCCGTCCGA
AAAACGTCTCCGGAACATGCGTGGCCTGTGTTATGGAGGGGACGCGTCCGATTCTCGCGGAGGTTCAGGCGCTTGTCTCC
AAGACAGGCTTTGGTACGCCGCGCCGTCAAGCGGCCGGTTTTGATTATAACCGCGCGGCGCTGTTGATTGCAGTGCTGGA
AAAGCGCGGAGGTTATTTTTTTGGTACGCTCGACGCCTATATCAATGTGGTCGGCGGTCTGCGGCTGGATGAACCGGCCG
CTGATCTGCCGGTTGCAATGGCGCTTGTATCAAATCTGCTGGATAAATGTATTCCAGATGATCTGGCAGCCTTTGGTGAA
ATTGGATTGGCCGGAGAGGTGCGCTCTGTTGGTAGCATTCAACAGCGTGTCAGCGAGGCATACCGGCTTGGTTTTACGAC
CTGTGTGATTCCTCGCCACTGTGTTTCAATGGTCGACGCGCGCGATATGCCGGATTTAAATCTGATTGGCGTGCAAAATC
TGTCACAGGCGATCGCGGTCATCCGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-227)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-444)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A174PYD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.98

99.351

0.506
  radA Streptococcus mitis SK321

48.018

98.268

0.472
  radA Streptococcus pneumoniae D39

47.912

98.485

0.472
  radA Streptococcus pneumoniae TIGR4

47.912

98.485

0.472
  radA Streptococcus pneumoniae R6

47.912

98.485

0.472
  radA Streptococcus pneumoniae Rx1

47.912

98.485

0.472
  radA Streptococcus mitis NCTC 12261

47.797

98.268

0.47