Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AST93_RS04820 Genome accession   NZ_AP014855
Coordinates   1009411..1010040 (+) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain NIAH_Bird_3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004411..1015040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AST93_RS04795 (EAB3F_0885) - 1004803..1006563 (-) 1761 WP_095573814.1 AAA family ATPase -
  AST93_RS04800 (EAB3F_0886) matP 1006749..1007201 (+) 453 WP_059219816.1 macrodomain Ter protein MatP -
  AST93_RS04805 (EAB3F_0887) ompA 1007276..1008328 (-) 1053 WP_024164823.1 porin OmpA -
  AST93_RS04815 (EAB3F_0888) sulA 1008684..1009193 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  AST93_RS04820 (EAB3F_0889) sxy/tfoX 1009411..1010040 (+) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  AST93_RS04825 (EAB3F_0890) yccS 1010000..1012165 (-) 2166 WP_072248637.1 YccS family putative transporter -
  AST93_RS04830 (EAB3F_0891) - 1012175..1012621 (-) 447 WP_095573815.1 YccF domain-containing protein -
  AST93_RS04835 (EAB3F_0892) helD 1012744..1014798 (+) 2055 WP_095573816.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=67066 AST93_RS04820 WP_059219814.1 1009411..1010040(+) (sxy/tfoX) [Escherichia albertii strain NIAH_Bird_3]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=67066 AST93_RS04820 WP_059219814.1 1009411..1010040(+) (sxy/tfoX) [Escherichia albertii strain NIAH_Bird_3]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895

Multiple sequence alignment