Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5I26_RS07550 Genome accession   NZ_CP094681
Coordinates   1576568..1577923 (+) Length   451 a.a.
NCBI ID   WP_024733279.1    Uniprot ID   A0A3E3JZ26
Organism   Sellimonas intestinalis strain VE303-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1571568..1582923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5I26_RS07530 (K5I26_07530) cysK 1572096..1573028 (+) 933 WP_024733283.1 cysteine synthase A -
  K5I26_RS07535 (K5I26_07535) - 1573122..1573496 (+) 375 WP_024733282.1 GntR family transcriptional regulator -
  K5I26_RS07540 (K5I26_07540) - 1573517..1575955 (+) 2439 WP_024733281.1 ATP-dependent Clp protease ATP-binding subunit -
  K5I26_RS07545 (K5I26_07545) - 1576024..1576437 (+) 414 WP_024733280.1 hypothetical protein -
  K5I26_RS07550 (K5I26_07550) radA 1576568..1577923 (+) 1356 WP_024733279.1 DNA repair protein RadA Machinery gene
  K5I26_RS07555 (K5I26_07555) - 1578000..1578653 (+) 654 WP_024733278.1 TetR/AcrR family transcriptional regulator -
  K5I26_RS07560 (K5I26_07560) - 1578735..1579460 (+) 726 WP_024733277.1 ABC transporter ATP-binding protein -
  K5I26_RS07565 (K5I26_07565) - 1579444..1580166 (+) 723 WP_024733276.1 hypothetical protein -
  K5I26_RS07570 (K5I26_07570) - 1580171..1581301 (+) 1131 WP_247211005.1 MFS transporter -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49577.45 Da        Isoelectric Point: 7.3600

>NTDB_id=670650 K5I26_RS07550 WP_024733279.1 1576568..1577923(+) (radA) [Sellimonas intestinalis strain VE303-03]
MAKAKKTVFFCQNCGHEEAKWLGQCPVCKEWNTFVEEKKLPEKGSESGIRRKAEPISLSRIETKGEERIRTEMEELDRVL
GGGIVKGSLVLVGGDPGIGKSTLLLQVCRILGEKGEEIIYISGEESARQIKLRADRMGKFDDRLSLLCETNLETIEEVIR
TKKPHIAVIDSIQTMYSEEIGSAPGSVSQVREATNTLMHLAKGMGITIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRSVKNRFGSTNEIGVFEMRENGLQEVKNPSEFMLNGRPEHASGSVVACSMEGTRPILLEIQALVCRTNFGMPR
RTAAGTDYNRVNLLMAVLEKRLGMALADCDAYVNIAGGIRMNEPAIDLGIVLALVSSYQNKPVDPYTIVFGEVGLSGEVR
AVSMPKQRVMEAKKLGFHTCILPGVSVESVGEVSKMKIIGVKNVSEAIQHL

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=670650 K5I26_RS07550 WP_024733279.1 1576568..1577923(+) (radA) [Sellimonas intestinalis strain VE303-03]
ATGGCTAAAGCAAAAAAAACAGTATTTTTCTGTCAGAACTGTGGACATGAGGAAGCCAAGTGGTTGGGACAGTGTCCAGT
CTGCAAGGAATGGAATACATTTGTAGAAGAGAAAAAGTTGCCTGAGAAAGGGAGTGAGTCGGGAATCCGCAGAAAGGCAG
AGCCCATTTCCCTTTCCAGGATTGAGACGAAAGGCGAGGAGCGGATCCGGACAGAGATGGAAGAGTTGGACCGTGTACTT
GGCGGAGGGATTGTGAAGGGATCTCTGGTGCTGGTAGGGGGAGATCCTGGCATTGGGAAATCCACCCTTTTACTACAAGT
CTGCCGGATTTTAGGGGAGAAAGGTGAGGAGATCATCTATATTTCCGGAGAGGAATCCGCAAGACAGATTAAGCTTAGAG
CCGACCGGATGGGAAAGTTTGACGATCGGCTTTCTCTGTTGTGTGAAACGAATTTGGAGACGATCGAGGAAGTTATCCGA
ACAAAGAAGCCGCATATTGCGGTCATTGACTCCATTCAGACAATGTACAGCGAGGAGATTGGATCCGCTCCGGGAAGTGT
GTCCCAGGTGCGGGAGGCAACCAATACCCTGATGCACCTGGCAAAGGGAATGGGCATTACAATCTTTATTGTCGGGCATG
TAACCAAAGAGGGGACGGTGGCAGGCCCAAGGGTACTGGAACACATGGTGGACACAGTGTTGTATTTTGAAGGAGACCGT
CATGCTTCCTACCGGATTCTCAGAAGTGTGAAGAACCGATTCGGATCCACCAATGAGATCGGCGTGTTTGAGATGCGGGA
GAACGGACTTCAGGAGGTGAAGAATCCGTCTGAATTTATGCTGAACGGCCGGCCGGAACACGCTTCCGGTTCGGTTGTCG
CCTGTTCCATGGAAGGAACGAGACCGATTCTGCTTGAGATTCAGGCTCTCGTATGCCGGACAAACTTCGGGATGCCGAGG
CGTACAGCGGCGGGGACTGACTACAACCGGGTCAATCTTCTGATGGCGGTGCTGGAAAAAAGGCTGGGTATGGCGCTTGC
GGACTGTGACGCTTATGTAAATATAGCAGGGGGGATCCGGATGAATGAGCCGGCTATTGACCTGGGCATCGTTCTGGCTC
TTGTCTCCAGCTATCAGAACAAGCCGGTGGATCCATATACGATTGTCTTCGGAGAGGTTGGATTAAGCGGAGAAGTCCGG
GCAGTCAGTATGCCAAAGCAGAGAGTCATGGAGGCAAAGAAACTTGGATTTCATACCTGTATTCTGCCAGGGGTCTCTGT
AGAGAGTGTCGGAGAAGTGTCGAAGATGAAAATAATTGGTGTGAAAAATGTGAGCGAAGCGATACAGCATTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

AAA domain (AAA_25)

(64-218)

Subunit ChlI of Mg-chelatase (ChlI)

(342-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3JZ26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.608

100

0.57
  radA Streptococcus mitis NCTC 12261

53.201

100

0.534
  radA Streptococcus pneumoniae Rx1

53.201

100

0.534
  radA Streptococcus pneumoniae D39

53.201

100

0.534
  radA Streptococcus pneumoniae R6

53.201

100

0.534
  radA Streptococcus pneumoniae TIGR4

53.201

100

0.534
  radA Streptococcus mitis SK321

53.201

100

0.534