Detailed information NTG0670638

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: K5I24_RS15930
• Genome accession: NZ_CP094679
• Coordinates: 3273506..3274873 (+)
• Length: 455 a.a.
• NCBI ID: WP_055213143.1
• Uniprot ID: -
• Organism: Dorea longicatena strain VE303-06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3268506..3279873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5I24_RS15910 (K5I24_15910)	purD	3268786..3270060 (+)	1275	WP_006427992.1	phosphoribosylamine--glycine ligase	-
K5I24_RS15915 (K5I24_15915)	-	3270209..3270580 (+)	372	WP_006427991.1	GntR family transcriptional regulator	-
K5I24_RS15920 (K5I24_15920)	-	3270601..3273036 (+)	2436	WP_173819428.1	ATP-dependent Clp protease ATP-binding subunit	-
K5I24_RS15925 (K5I24_15925)	-	3273093..3273506 (+)	414	WP_006427989.1	hypothetical protein	-
K5I24_RS15930 (K5I24_15930)	radA	3273506..3274873 (+)	1368	WP_055213143.1	DNA repair protein RadA	Machinery gene
K5I24_RS15935 (K5I24_15935)	-	3274995..3276176 (-)	1182	WP_006427987.1	MFS transporter	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49316.03 Da
• Isoelectric Point: 7.4799

>NTDB_id=670638 K5I24_RS15930 WP_055213143.1 3273506..3274873(+) (radA) [Dorea longicatena strain VE303-06]
MAKAKKSIYFCQNCGHEESKWLGQCPMCKEWNTFVEEKVSTPVSGVSRGSSVAKPKSQVVTLSSVSTTDEERTKTGIKEL
DRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCQKLADKQKKVLYISGEESLKQIKLRANRMGEFADSLFLLCETNLAAIQ
SVIEKETPDVVVIDSIQTMYNEEVASAPGSVSQVRESTNVLMQLAKGLNISTFIVGHVTKEGTVAGPRVLEHMVDTVLYF
EGDRHASYRILRGVKNRFGSTNEIGVFEMRREGLCEVENPSEFMLSGKPENASGSVVACAMEGTRPMLMEIQALICRSNF
GMPRRTAAGLDYNRVNLLMAVLEKRMGLPLSNYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPIAEDTIVFGEVGLS
GEVRAVTMPEQRVAEAKKLGFKTCIVPAVALKSIGKVDGIEVIGVNSVNQAMNYI

Nucleotide

• Length: 1368 bp

>NTDB_id=670638 K5I24_RS15930 WP_055213143.1 3273506..3274873(+) (radA) [Dorea longicatena strain VE303-06]
ATGGCAAAAGCAAAGAAGAGTATATATTTCTGTCAGAATTGTGGACATGAGGAGAGCAAGTGGCTCGGACAGTGCCCGAT
GTGTAAAGAATGGAATACATTTGTAGAGGAAAAGGTGAGTACTCCGGTAAGTGGTGTATCCAGAGGAAGCAGCGTGGCGA
AGCCAAAGAGCCAGGTTGTGACATTGTCCAGTGTATCGACGACAGATGAAGAACGAACAAAAACTGGAATAAAAGAATTA
GACAGAGTATTAGGCGGGGGAATCGTACAAGGTTCCCTCGTATTAGTAGGCGGGGATCCCGGAATCGGAAAGTCCACATT
ATTGCTTCAGGTGTGCCAGAAACTGGCGGACAAGCAGAAGAAGGTGCTCTACATTTCCGGTGAGGAATCACTGAAGCAGA
TCAAGCTGCGTGCAAATCGTATGGGAGAATTTGCAGACAGCCTCTTTTTATTATGTGAGACGAATCTTGCAGCAATTCAA
AGTGTGATTGAGAAAGAGACACCGGATGTGGTTGTGATTGATTCGATTCAGACGATGTATAACGAAGAGGTAGCGTCTGC
GCCGGGAAGTGTATCTCAGGTGCGCGAATCCACGAATGTATTGATGCAGCTCGCAAAAGGACTGAATATATCCACTTTTA
TCGTAGGACATGTGACGAAGGAAGGAACGGTTGCGGGACCGAGAGTGTTGGAGCATATGGTGGATACTGTGCTTTATTTT
GAGGGTGACAGACACGCATCATACCGGATCTTACGTGGAGTAAAGAACCGTTTTGGTTCTACGAATGAGATCGGTGTGTT
TGAGATGCGGAGAGAAGGACTGTGCGAAGTGGAGAATCCTTCGGAATTCATGCTGAGCGGCAAGCCGGAGAATGCGTCCG
GATCTGTGGTGGCATGTGCGATGGAAGGTACAAGACCAATGCTGATGGAGATTCAGGCATTGATCTGCCGGAGTAATTTT
GGAATGCCGAGAAGAACTGCGGCGGGACTGGATTATAACCGTGTCAATCTGCTGATGGCAGTTCTGGAAAAGAGGATGGG
TCTGCCGTTATCCAATTATGATGCTTATGTCAATATTGCCGGTGGAATCCGTATGAATGAACCGGCGGCCGATCTTGGGA
TTGTAATGGCCATTGCTTCCAGCTATAAGAATAAACCGATCGCAGAAGATACGATCGTATTCGGGGAAGTAGGATTGAGC
GGGGAAGTAAGGGCTGTGACCATGCCGGAGCAGAGAGTTGCAGAAGCAAAAAAGCTTGGATTTAAGACTTGTATTGTACC
AGCGGTTGCATTGAAGTCCATTGGAAAAGTGGATGGAATAGAAGTGATCGGGGTCAATAGTGTGAATCAGGCGATGAATT
ATATTTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• Subunit ChlI of Mg-chelatase (ChlI) (347-428)

• AAA domain (AAA_25) (65-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.395	99.56	0.571
radA	Streptococcus mitis NCTC 12261	53.626	100	0.536
radA	Streptococcus pneumoniae Rx1	53.626	100	0.536
radA	Streptococcus pneumoniae D39	53.626	100	0.536
radA	Streptococcus pneumoniae R6	53.626	100	0.536
radA	Streptococcus pneumoniae TIGR4	53.626	100	0.536
radA	Streptococcus mitis SK321	53.626	100	0.536