Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OIE63_RS15225 Genome accession   NZ_CP109079
Coordinates   3441614..3442261 (+) Length   215 a.a.
NCBI ID   WP_326688371.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01795     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3436614..3447261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE63_RS15210 (OIE63_15210) - 3436628..3437839 (+) 1212 WP_326688368.1 pyridoxal phosphate-dependent aminotransferase -
  OIE63_RS15215 (OIE63_15215) - 3437950..3440184 (-) 2235 WP_326688369.1 FtsX-like permease family protein -
  OIE63_RS15220 (OIE63_15220) - 3440350..3441609 (+) 1260 WP_326688370.1 histidine kinase -
  OIE63_RS15225 (OIE63_15225) vraR 3441614..3442261 (+) 648 WP_326688371.1 response regulator transcription factor Regulator
  OIE63_RS15230 (OIE63_15230) - 3442374..3442991 (-) 618 WP_326688372.1 MBL fold metallo-hydrolase -
  OIE63_RS15235 (OIE63_15235) - 3442991..3444079 (-) 1089 WP_326688373.1 S-(hydroxymethyl)mycothiol dehydrogenase -
  OIE63_RS15240 (OIE63_15240) - 3444362..3444955 (+) 594 WP_326692763.1 ATP-binding protein -
  OIE63_RS15245 (OIE63_15245) - 3445216..3446088 (-) 873 WP_326688374.1 SigE family RNA polymerase sigma factor -
  OIE63_RS15250 (OIE63_15250) - 3446290..3446967 (+) 678 WP_326688375.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23360.74 Da        Isoelectric Point: 4.8516

>NTDB_id=670616 OIE63_RS15225 WP_326688371.1 3441614..3442261(+) (vraR) [Streptomyces sp. NBC_01795]
MTIRVLLADDQEMVRAAFRMILGSQPDIEIVAEAADGLTAVERARELRPDVCLLDIRMPGIDGLEATRQLAGPEADEPLN
VLIATTFDLDEYVYRALRDGACGFLLKDGSPALLTEAVRAVASGGSLISPSITVRLLRHMSAPTTQPERSPTEPLTSREL
DVVRLVARGRTNEEVAAELHVTLSTVKTHLANAQRKLGARNRVEIAAWAWESGTV

Nucleotide


Download         Length: 648 bp        

>NTDB_id=670616 OIE63_RS15225 WP_326688371.1 3441614..3442261(+) (vraR) [Streptomyces sp. NBC_01795]
ATGACCATCAGGGTGCTCCTCGCCGACGACCAGGAGATGGTCCGTGCGGCCTTCCGCATGATCCTCGGCTCCCAGCCGGA
CATCGAGATCGTCGCCGAGGCCGCCGACGGCCTCACCGCCGTCGAGCGGGCGCGCGAGCTGCGCCCCGACGTGTGCCTGC
TCGACATCCGCATGCCGGGCATCGACGGCCTGGAGGCCACCCGCCAGCTGGCGGGCCCCGAGGCGGACGAGCCCCTGAAC
GTCCTGATCGCCACGACCTTCGACCTCGACGAGTACGTCTACCGCGCCCTGCGCGACGGCGCGTGCGGCTTCCTCCTCAA
GGACGGCTCCCCCGCGCTCCTCACCGAAGCGGTACGCGCGGTGGCTTCGGGCGGCTCCCTGATCTCACCGTCCATCACCG
TCCGTCTCCTGCGCCACATGTCGGCCCCGACAACGCAGCCGGAACGCTCCCCGACCGAGCCCCTGACCTCCCGCGAGCTC
GACGTCGTCCGCCTCGTGGCCCGTGGCCGCACCAACGAGGAGGTCGCCGCCGAGCTCCACGTCACCCTCTCCACCGTCAA
GACCCACCTGGCCAACGCCCAACGCAAGCTGGGCGCACGCAACCGCGTGGAAATCGCGGCGTGGGCCTGGGAATCCGGAA
CGGTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.963

100

0.381