Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE63_RS10655 Genome accession   NZ_CP109079
Coordinates   2388072..2388869 (+) Length   265 a.a.
NCBI ID   WP_326687570.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01795     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2383072..2393869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE63_RS10645 (OIE63_10640) - 2383888..2386785 (-) 2898 WP_326687568.1 vitamin B12-dependent ribonucleotide reductase -
  OIE63_RS10650 (OIE63_10645) nrdR 2386952..2387611 (-) 660 WP_326687569.1 transcriptional regulator NrdR -
  OIE63_RS10655 (OIE63_10650) dinR/lexA 2388072..2388869 (+) 798 WP_326687570.1 transcriptional repressor LexA Regulator
  OIE63_RS10660 (OIE63_10655) - 2389080..2391056 (-) 1977 WP_326687571.1 ATP-dependent DNA helicase -
  OIE63_RS10665 (OIE63_10660) - 2391152..2392891 (-) 1740 WP_326692681.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28537.19 Da        Isoelectric Point: 6.5016

>NTDB_id=670599 OIE63_RS10655 WP_326687570.1 2388072..2388869(+) (dinR/lexA) [Streptomyces sp. NBC_01795]
MTTTADSATITSQNRSAQAIDEIQPVNDAMNAETQEGPQAKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDTPSTAQAAADTTGKPSASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGDLFVLKVIGDSMVEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NASYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=670599 OIE63_RS10655 WP_326687570.1 2388072..2388869(+) (dinR/lexA) [Streptomyces sp. NBC_01795]
GTGACCACGACAGCAGACAGCGCCACCATCACCTCCCAGAACCGCTCAGCGCAGGCAATCGACGAGATTCAGCCGGTGAA
TGACGCCATGAACGCAGAGACTCAGGAAGGTCCACAGGCGAAGCGCTCGCTGCCAGGGCGACCTCCCGGCATCCGGGCGG
ACAGTTCCGGGCTCACGGACCGGCAGCGACGGGTGATCGAGGTGATCCGCGACTCCGTCCAGCGGCGCGGCTACCCGCCG
TCCATGCGCGAGATCGGCCAGGCCGTGGGCCTCTCCAGCACCTCCTCGGTGGCGCACCAGCTCATGGCACTGGAGCGGAA
GGGTTTCCTCCGTCGTGACCCGCACCGCCCTCGCGCCTACGAGGTGCGCGGCTCGGACACGCCCAGCACGGCGCAGGCCG
CGGCCGACACGACAGGCAAGCCGTCCGCCTCCTACGTCCCGCTGGTGGGCCGGATCGCAGCAGGGGGGCCCATCCTCGCC
GAGGAGTCGGTCGAGGATGTCTTCCCGCTGCCACGCCAGCTCGTCGGCGACGGCGATCTGTTCGTCCTCAAGGTCATCGG
AGATTCGATGGTCGAGGCCGCGATCTGCGACGGGGACTGGGTCACCGTCAGGCGCCAGCCGGTTGCCGAGAACGGCGACA
TCGTGGCCGCGATGCTCGACGGGGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTGTTGCCGCAC
AACGCCTCGTACCAGCCGATCCCGGGCGATGACGCCACCATCCTCGGCAAGGTCGTCGCCGTACTGCGGAGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.86

80.755

0.362