Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTX78_RS22730 Genome accession   NZ_CP094669
Coordinates   5618609..5619994 (-) Length   461 a.a.
NCBI ID   WP_243798611.1    Uniprot ID   -
Organism   Hymenobacter tibetensis strain KACC 21982     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5613609..5624994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX78_RS22705 (MTX78_22705) rplU 5614690..5614995 (+) 306 WP_243798601.1 50S ribosomal protein L21 -
  MTX78_RS22710 (MTX78_22710) rpmA 5615094..5615381 (+) 288 WP_243798603.1 50S ribosomal protein L27 -
  MTX78_RS22715 (MTX78_22715) - 5615481..5616251 (-) 771 WP_243798605.1 cyclase family protein -
  MTX78_RS22720 (MTX78_22720) - 5616439..5616801 (+) 363 WP_243798607.1 hypothetical protein -
  MTX78_RS22725 (MTX78_22725) - 5616944..5618416 (-) 1473 WP_243798609.1 redoxin family protein -
  MTX78_RS22730 (MTX78_22730) radA 5618609..5619994 (-) 1386 WP_243798611.1 DNA repair protein RadA Machinery gene
  MTX78_RS22735 (MTX78_22735) - 5620442..5621842 (+) 1401 WP_243798613.1 sensor histidine kinase -
  MTX78_RS22740 (MTX78_22740) - 5622111..5623766 (+) 1656 WP_243798615.1 FAD-dependent oxidoreductase -
  MTX78_RS22745 (MTX78_22745) - 5624106..5624945 (+) 840 WP_243798617.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50243.64 Da        Isoelectric Point: 5.5550

>NTDB_id=670584 MTX78_RS22730 WP_243798611.1 5618609..5619994(-) (radA) [Hymenobacter tibetensis strain KACC 21982]
MAKLKTLYFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIQKDEPTAATAWKANTSVGGTSKAARPRVISEILFEEEPRMLT
QDGELDRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMTLRQLKVLYVSGEESEQQIKMRAERLGEQHPGCYILTETNTQ
NIFKQIDQLQPNVVIVDSIQTLHSGLVESGAGSVSQVRECTQELLKYAKETGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTIKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRTESLSGMAIGATLEGNRPLLVEVQALVTP
ATYGTPQRSSTGFDAKRLNMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDLPIRSEMCLAAEV
GLSGEIRAVSRLDQRLSEAEKLGFAEMYISQFNARGLDLSRYGIRVQPASRLDEVLEGLFA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=670584 MTX78_RS22730 WP_243798611.1 5618609..5619994(-) (radA) [Hymenobacter tibetensis strain KACC 21982]
ATGGCCAAGCTCAAGACCTTATACTTCTGTCAAAACTGCGGTGCTCAATCAGCCAAATGGATTGGCCGCTGCCCTAGTTG
CGGCGAATGGAACACCTACGTCGAGGAAGTTATTCAGAAAGACGAACCCACAGCGGCTACTGCCTGGAAAGCCAACACCA
GTGTGGGGGGCACCAGCAAAGCAGCCCGGCCGCGCGTCATTTCCGAAATTCTGTTTGAAGAAGAGCCCCGTATGCTCACC
CAGGATGGGGAACTGGACCGGGTGCTCGGCGGCGGGCTCGTACCGGGTTCTTTGGTGCTGATTGGGGGAGAGCCGGGTAT
CGGTAAAAGCACGCTCATGCTCCAGATTGCCATGACCCTGCGCCAGCTCAAGGTGTTGTATGTGTCGGGCGAGGAAAGCG
AGCAGCAAATCAAGATGCGGGCTGAGCGGCTCGGCGAGCAACACCCCGGCTGCTACATCCTCACTGAAACCAACACCCAG
AACATTTTCAAACAAATCGACCAGCTCCAACCCAATGTGGTTATCGTCGATTCCATCCAGACCTTGCACTCTGGGCTCGT
GGAAAGCGGAGCGGGTTCGGTGAGCCAGGTGCGCGAATGCACGCAGGAGCTACTTAAGTACGCCAAGGAAACTGGGGTGC
CGGTGCTGCTCATCGGCCACATCACCAAGGATGGCTCTATTGCTGGCCCTAAAATTCTGGAGCACATGGTGGATACAGTG
CTGCAGTTTGAAGGCGACCGGCACCTAAGCTACCGTATTCTGCGCACCATCAAGAACCGCTTCGGTTCCACCTCCGAACT
GGGCATCTATGAGATGCAGGGCACTGGTTTGCGGCAAGTCAGCAACCCGAGTGAAATCCTGCTCAGCCAACGCACCGAGA
GCTTAAGTGGCATGGCCATTGGTGCCACTCTGGAAGGCAACCGGCCGCTGTTAGTGGAAGTGCAGGCCCTCGTAACGCCC
GCCACCTATGGCACACCCCAGCGAAGCTCCACTGGCTTCGACGCCAAACGCTTGAACATGCTGCTGGCGGTGCTGGAAAA
GCGTAGTGGCCTGCGCCTAGGACAGCACGATGTATTTCTAAACATTGCCGGTGGTTTGCGGCTTGATGATCCAGCACTCG
ACCTAGCGGTGTGCGCTGCAGTGGTAAGTAGCCTCAACGACTTACCTATCCGGAGCGAAATGTGCTTGGCTGCTGAAGTC
GGGCTAAGTGGAGAAATCCGGGCTGTAAGCAGGCTAGATCAGCGGTTAAGTGAGGCAGAAAAGCTGGGATTTGCAGAAAT
GTATATTTCCCAATTTAATGCCCGAGGCCTCGATTTATCCCGCTACGGGATTCGAGTACAGCCAGCTAGCCGTTTGGATG
AAGTATTAGAGGGTTTGTTTGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.092

99.349

0.508
  radA Streptococcus pneumoniae Rx1

49.134

100

0.492
  radA Streptococcus pneumoniae D39

49.134

100

0.492
  radA Streptococcus pneumoniae R6

49.134

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.134

100

0.492
  radA Streptococcus mitis NCTC 12261

48.918

100

0.49
  radA Streptococcus mitis SK321

48.918

100

0.49