Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE65_RS30880 Genome accession   NZ_CP109075
Coordinates   6840561..6841355 (-) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_01800     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6835561..6846355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE65_RS30865 (OIE65_30930) - 6835604..6836482 (+) 879 WP_326606107.1 GNAT family N-acetyltransferase -
  OIE65_RS30870 (OIE65_30935) - 6836543..6838402 (+) 1860 WP_326606108.1 IucA/IucC family siderophore biosynthesis protein -
  OIE65_RS30875 (OIE65_30940) - 6838453..6840423 (+) 1971 WP_326606109.1 ATP-dependent DNA helicase -
  OIE65_RS30880 (OIE65_30945) dinR/lexA 6840561..6841355 (-) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OIE65_RS30885 (OIE65_30950) nrdR 6841900..6842412 (+) 513 WP_326606110.1 transcriptional regulator NrdR -
  OIE65_RS30890 (OIE65_30955) - 6842573..6845476 (+) 2904 WP_326606111.1 vitamin B12-dependent ribonucleotide reductase -
  OIE65_RS30895 (OIE65_30960) - 6845631..6846167 (-) 537 WP_326606112.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=670571 OIE65_RS30880 WP_030927140.1 6840561..6841355(-) (dinR/lexA) [Streptomyces sp. NBC_01800]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=670571 OIE65_RS30880 WP_030927140.1 6840561..6841355(-) (dinR/lexA) [Streptomyces sp. NBC_01800]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCGGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGATACCCA
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAACTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCATCGCCCTCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTGTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371