Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE65_RS14210 Genome accession   NZ_CP109075
Coordinates   3157798..3159723 (+) Length   641 a.a.
NCBI ID   WP_326603619.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01800     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152798..3164723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE65_RS14195 (OIE65_14240) - 3154083..3154388 (+) 306 WP_326608456.1 YtxH domain-containing protein -
  OIE65_RS14200 (OIE65_14245) - 3154449..3155894 (+) 1446 WP_326603618.1 FGGY family carbohydrate kinase -
  OIE65_RS14205 (OIE65_14250) rcrP 3156065..3157798 (+) 1734 WP_267005303.1 ABC transporter ATP-binding protein Regulator
  OIE65_RS14210 (OIE65_14255) rcrQ 3157798..3159723 (+) 1926 WP_326603619.1 ABC transporter ATP-binding protein Regulator
  OIE65_RS14215 (OIE65_14260) - 3159740..3160867 (-) 1128 WP_326603620.1 RNA polymerase sigma factor -
  OIE65_RS14220 (OIE65_14265) dnaG 3161093..3162997 (-) 1905 WP_326603622.1 DNA primase -
  OIE65_RS14225 (OIE65_14270) - 3163148..3164407 (-) 1260 WP_326603624.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69126.44 Da        Isoelectric Point: 5.3040

>NTDB_id=670529 OIE65_RS14210 WP_326603619.1 3157798..3159723(+) (rcrQ) [Streptomyces sp. NBC_01800]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRKTNSGLADLLSGVDFVPGHGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGVMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=670529 OIE65_RS14210 WP_326603619.1 3157798..3159723(+) (rcrQ) [Streptomyces sp. NBC_01800]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTCTACGGGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGTCGGCGGCTGCCCGAGGGCACA
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCGTCCC
CGGCCACGGCATCGACTTCGATGCAGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTACTGATAGCCGTC
GTCGGCGGGTTGCGGGTGGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCCGGTATGAGCCGGACAAACCACTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.867

93.916

0.374