Detailed information NTG0670499

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ISX51_RS14000
• Genome accession: NZ_CP094659
• Coordinates: 3108241..3109665 (-)
• Length: 474 a.a.
• NCBI ID: WP_281052965.1
• Uniprot ID: -
• Organism: Vibrio lentus strain ED252
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3103241..3114665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ISX51_RS13975 (ISX51_13960)	-	3103797..3104450 (+)	654	WP_102558192.1	thiopurine S-methyltransferase	-
ISX51_RS13980 (ISX51_13965)	purT	3104577..3105752 (-)	1176	WP_102558191.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ISX51_RS13985 (ISX51_13970)	cdd	3105920..3106807 (-)	888	WP_017104496.1	cytidine deaminase	-
ISX51_RS13990 (ISX51_13975)	-	3107165..3107842 (-)	678	WP_281052964.1	LrgB family protein	-
ISX51_RS13995 (ISX51_13980)	-	3107845..3108216 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
ISX51_RS14000 (ISX51_13985)	sbcB	3108241..3109665 (-)	1425	WP_281052965.1	exodeoxyribonuclease I	Machinery gene
ISX51_RS14005 (ISX51_13990)	-	3110600..3111034 (+)	435	WP_102307335.1	DUF4402 domain-containing protein	-
ISX51_RS14010 (ISX51_13995)	-	3111089..3111526 (+)	438	WP_281052966.1	DUF4402 domain-containing protein	-
ISX51_RS14015 (ISX51_14000)	-	3111523..3112233 (+)	711	WP_102307334.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54757.06 Da
• Isoelectric Point: 4.9686

>NTDB_id=670499 ISX51_RS14000 WP_281052965.1 3108241..3109665(-) (sbcB) [Vibrio lentus strain ED252]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPGPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGINWPTNDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKTAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVIDLAKDPSPLLEMDADELKERLYTKRSELTEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSNDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREYYESRLEDYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=670499 ISX51_RS14000 WP_281052965.1 3108241..3109665(-) (sbcB) [Vibrio lentus strain ED252]
ATGAGTTCAGATAATCAGTCGACCTACTTCTTTTTCGATTACGAAACATGGGGCGTTAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAATATTATCGGAGAGCCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTGCCTGGACCTGAAGCCGCATTAATAACCCGTATTACACCTCAAAAAGCCATGTCTCAAGGCCTACCTGAGCCT
GAGTTTATCGCTAAGATTCATGCCGAGCTTGCTAAGCCAAATACGACGAGCCTTGGCTATAACAGCATCCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGTAACTTTATCGACCCATATGCGTGGAGCTGGCAGAACGGCAATTCACGTTGGG
ATTTACTGGATGTTATGCGTGCAGTTCATGCACTGCGTCCTGAAGGTATTAACTGGCCAACAAACGATGAAGGTTTTCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATCGAACACGAAAACGCGCACGATGCGATGGCTGATGTGATTGC
GACTATCGAACTGGCTAAAAAGTTAAAGACCGCGCAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAGCGTA
AGTTGAATGAGTTAGTCGACATCGTAAACATGACGCCTTTAATGCACGTTTCTGGCATGTTCGGTCGTGATTGTAATTAC
ACAAGCTGGGTGGTGCCTATGGCGTGGCATCCGACCAACCAAAACGCGGTTATTGTGATCGACCTAGCGAAAGACCCAAG
TCCTTTACTGGAAATGGATGCGGATGAACTAAAAGAAAGGCTTTATACCAAGCGCAGTGAGCTTACTGAAGACGAACTGC
CAGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTCGCGCCAGCAAAAACGCTCACTGCTGAAAATGCTGAG
ACGATCGGTATCGATCGTCAACAGTGTTTGAAGAATCTAGCCCTATTACGTGAACATCCAGAGATCCGTGAAAAGCTGAT
CGGTCTATATTCACAAGAGCGTGAATACGAGAAAAGCAATGACGTAGACACACACCTTTACGACGGCTTCTTTTCACCAG
CCGACAAGACCGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCACTGGACATCACTTTTAGTGACGAA
CGTATTAAGCCTTTGTTGTTCCGTTACCGCGCTCGCCATTTTCCATGGACGCTAGACGAAGCTGAACAACTAAAATGGGC
TAACCACTGTCGTGAGTATTATGAGAGCCGTTTAGAAGATTACATGCTAAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCCATCTTGAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.321	99.789	0.762