Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ISX51_RS13900 Genome accession   NZ_CP094659
Coordinates   3090286..3091467 (-) Length   393 a.a.
NCBI ID   WP_281052953.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3085286..3096467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS13890 (ISX51_13875) - 3085970..3087739 (+) 1770 WP_281052951.1 ABC-F family ATP-binding cassette domain-containing protein -
  ISX51_RS13895 (ISX51_13880) - 3088085..3090133 (+) 2049 WP_281052952.1 hybrid sensor histidine kinase/response regulator -
  ISX51_RS13900 (ISX51_13885) cqsA 3090286..3091467 (-) 1182 WP_281052953.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ISX51_RS13905 (ISX51_13890) - 3091778..3093166 (-) 1389 WP_281052954.1 PLP-dependent aminotransferase family protein -
  ISX51_RS13910 (ISX51_13895) - 3093270..3094166 (+) 897 WP_102513845.1 EamA family transporter -
  ISX51_RS13915 (ISX51_13900) - 3094306..3094701 (-) 396 WP_017109773.1 DUF1090 domain-containing protein -
  ISX51_RS13920 (ISX51_13905) - 3094960..3095970 (-) 1011 WP_281052955.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43818.03 Da        Isoelectric Point: 6.5541

>NTDB_id=670498 ISX51_RS13900 WP_281052953.1 3090286..3091467(-) (cqsA) [Vibrio lentus strain ED252]
MSDKTKKKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEESKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPDTPVYIDFFAHMSLWEGIRAAGAIAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQKFDCAVIVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKELSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGAEDKRKALFERAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=670498 ISX51_RS13900 WP_281052953.1 3090286..3091467(-) (cqsA) [Vibrio lentus strain ED252]
ATGAGTGATAAAACCAAAAAAAAACCATTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAACCAAAGCCAGAAACACTTGGTTCTGGGTAAACGTCCACCGCGCAACGCTGTTGTGATGCAGAGCAATGATTACC
TAGCCCTGTCACACAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCA
GCCATTTTCCTGCAAGATGAAGAGTCTAAACCTGCGTTTGAAACCGAACTCGCGAGCTATGTGGGAATGGAAAGTTGCTT
GCTTTCTCAATCTGGTTGGGCGGCCAATATTGGGTTACTTCAAACGATCTGTCCGCCAGATACGCCTGTGTATATCGACT
TTTTTGCACACATGTCGCTATGGGAAGGCATTCGCGCTGCGGGTGCAATCGCCCATCCATTTATGCATAACAATATGAGT
CACTTACGTAAGCAACTGGAACGTCATGGTTCTGGTGTGATTGTAGTCGACTCGGTCTACAGCACAATTGGCACCATTGC
TCCGTTACGCGACATCTACGAAATGGCGCAAAAGTTTGATTGCGCCGTCATCGTTGATGAATCGCATTCACTGGGCACTC
ATGGAGAGAATGGTGCTGGCTTAGTGCAGGCTCTTGGGCTCACTAATCAAGTCGACTTTATCACCGTCAGCTTGGCCAAA
ACCTTTGCTTATCGCGCAGGCGCAATCCTCGGGCCTAAAGAGCTCTCAGATACCTTGCCGTTTGTCGCATACCCTGCGAT
TTTTAGCTCAACCGTGTTGCCGCAAGAAGTGATTCGTTTGGAGAAAACCTTGGAGGTGATTAAAGGTGCAGAAGATAAAC
GAAAAGCATTATTTGAACGCGCTAAATCGCTCACCACAGGCCTCAAAAGGATTGGCTTTAACATCCGTAGCGAATCTCAA
ATCGTCGCATTAGAGTGCGGCAATGAGAGAAATACAGAGCGAGTGCGCGACTTCCTTGAACAACGTGATGTGTTCGGTGC
GGTGTTCTGCCGCCCCGCTACGGGCAAGAACAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACACCACGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.297

98.473

0.545