Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OIE51_RS20330 Genome accession   NZ_CP109073
Coordinates   4480365..4481300 (+) Length   311 a.a.
NCBI ID   WP_326600715.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01803     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4475365..4486300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE51_RS20310 (OIE51_20350) - 4475440..4475976 (+) 537 WP_326599170.1 GNAT family N-acetyltransferase -
  OIE51_RS20315 (OIE51_20355) - 4476033..4476380 (+) 348 WP_326599171.1 thiamine pyrophosphate-dependent enzyme -
  OIE51_RS20320 (OIE51_20360) - 4476642..4478021 (+) 1380 WP_326599172.1 hypothetical protein -
  OIE51_RS20325 (OIE51_20365) dnaG 4478097..4480022 (+) 1926 WP_326599173.1 DNA primase -
  OIE51_RS20330 (OIE51_20370) rpoS 4480365..4481300 (+) 936 WP_326600715.1 RNA polymerase sigma factor Regulator
  OIE51_RS20335 (OIE51_20375) - 4481297..4482079 (-) 783 WP_326600717.1 DUF6177 family protein -
  OIE51_RS20340 (OIE51_20380) - 4482058..4482330 (+) 273 WP_326599174.1 hypothetical protein -
  OIE51_RS20345 (OIE51_20385) - 4482327..4482752 (+) 426 WP_326599175.1 hypothetical protein -
  OIE51_RS20350 (OIE51_20390) - 4482827..4483306 (+) 480 WP_326599176.1 type VII secretion system-associated protein -
  OIE51_RS20355 (OIE51_20395) - 4483587..4484288 (+) 702 WP_326600719.1 endonuclease V -
  OIE51_RS20360 (OIE51_20400) - 4484278..4484616 (+) 339 WP_326599177.1 hypothetical protein -
  OIE51_RS20365 (OIE51_20405) - 4484627..4485490 (-) 864 WP_326599178.1 oxidoreductase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35407.63 Da        Isoelectric Point: 6.3139

>NTDB_id=670495 OIE51_RS20330 WP_326600715.1 4480365..4481300(+) (rpoS) [Streptomyces sp. NBC_01803]
MTPRPEGNGASSDLFRQYLREIGRIPLLTAADEVELSRRIEAGLFAEERLLTGTDLDDRLVLDLDRLVVRGRVAKRQLIE
ANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRAIADQARTIRVPVHVVELIN
RVIRVQRRVLQERGYEPSSEEIAVLLGITSARVSEILRLAQDPVSLQTPIGDEDDVNLGDLIEDADIPSPAESAAFLLLR
EQLECVLSTLADRERRVVELRYGLVDGRPRTLEEIGRLFGVTRERIRQIEHKTLGKLRDHTYAEQLRGYLD

Nucleotide


Download         Length: 936 bp        

>NTDB_id=670495 OIE51_RS20330 WP_326600715.1 4480365..4481300(+) (rpoS) [Streptomyces sp. NBC_01803]
GTGACCCCGCGGCCGGAGGGCAACGGCGCGTCCAGCGACCTCTTCCGGCAGTACCTGCGCGAGATCGGCCGCATTCCGCT
GCTCACCGCGGCCGACGAGGTGGAGCTGTCGCGCAGGATCGAGGCCGGTCTGTTCGCCGAGGAGCGGCTGCTGACCGGCA
CGGACCTCGACGACCGGCTCGTGCTGGACCTCGACCGGCTCGTCGTGCGCGGCCGGGTGGCCAAGCGGCAGCTCATCGAG
GCGAATCTGCGGCTGGTCGTCTCGGTGGCCAAGCGGTACATCGGGCGCGGCCTGACCATGCTGGACCTGGTCCAGGAGGG
CAACCTCGGGCTCATCCGGGCCGTCGAGAAGTTCGACTACACCCGCGGCTTCAAGTTCTCGACGTATGCCACCTGGTGGA
TCAGACAGGCGATGTCACGCGCGATAGCGGACCAGGCGCGCACGATCCGGGTGCCGGTGCACGTGGTGGAGTTGATCAAC
CGGGTGATCCGCGTTCAGCGCCGCGTTCTCCAGGAGCGCGGCTACGAGCCGTCGTCCGAGGAGATCGCCGTCCTGCTCGG
CATCACCTCGGCCCGGGTGAGCGAGATCCTGCGGCTGGCCCAGGACCCGGTCTCCCTCCAGACGCCGATCGGTGACGAGG
ACGACGTCAACCTCGGCGACCTGATCGAGGACGCCGACATCCCCTCCCCGGCCGAGTCCGCCGCGTTCCTGCTCCTGCGC
GAGCAGCTCGAATGCGTCCTGTCCACGCTGGCCGATCGCGAACGGCGCGTGGTGGAGTTGCGGTACGGCCTGGTCGATGG
CCGTCCCCGCACGCTGGAGGAGATCGGCCGCCTCTTCGGCGTCACACGCGAGCGCATTCGCCAGATAGAGCACAAGACCC
TCGGCAAACTGCGCGACCACACCTACGCCGAGCAGCTCCGCGGCTACCTGGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(157-233)

Sigma-70, region 4 (Sigma70_r4)

(246-298)

Sigma-70 region 2 (Sigma70_r2)

(78-147)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(13-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.712

94.855

0.405