Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ISX51_RS04000 Genome accession   NZ_CP094659
Coordinates   795531..796049 (+) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio lentus strain ED252     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 790531..801049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS03990 (ISX51_03990) gshA 793277..794845 (+) 1569 WP_281053368.1 glutamate--cysteine ligase -
  ISX51_RS03995 (ISX51_03995) - 794856..795506 (+) 651 WP_198598822.1 hypothetical protein -
  ISX51_RS04000 (ISX51_04000) luxS 795531..796049 (+) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  ISX51_RS04005 (ISX51_04005) - 796137..797408 (-) 1272 WP_017108711.1 CNNM domain-containing protein -
  ISX51_RS04010 (ISX51_04010) - 797536..798330 (-) 795 WP_029223243.1 inner membrane protein YpjD -
  ISX51_RS04015 (ISX51_04015) ffh 798531..799925 (+) 1395 WP_029223244.1 signal recognition particle protein -
  ISX51_RS04020 (ISX51_04020) rpsP 800138..800386 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  ISX51_RS04025 (ISX51_04025) rimM 800413..800967 (+) 555 WP_009847609.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=670478 ISX51_RS04000 WP_017079953.1 795531..796049(+) (luxS) [Vibrio lentus strain ED252]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=670478 ISX51_RS04000 WP_017079953.1 795531..796049(+) (luxS) [Vibrio lentus strain ED252]
ATGCCTTTATTAGATAGTTTTACTGTTGATCATACACGCATGAACGCCCCGGCAGTTCGTGTTGCGAAAACAATGCAGAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTGCGTTTTACGGCACCAAACAAAGATATCCTATCTGAAAAAGGTATCC
ATACTCTAGAGCACCTATACGCAGGATTTATGCGTAATCAACTGAATGGTTCAGACGTGGAAATCATCGATATTTCACCG
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACACCTTCAGAGCAACAAGTCGCAGACGGTTGGTTAGCGGC
TATGCAAGATGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCTAAAGATATCGCCAACGCGATCATCGCTGCAGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCAATGCTTCAAGAGCTTAAAATCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884