Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MT990_RS12245 Genome accession   NZ_CP094658
Coordinates   2658697..2660568 (-) Length   623 a.a.
NCBI ID   WP_243821775.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain JRPT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2653697..2665568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT990_RS12225 (MT990_12225) rsmI 2653982..2654992 (-) 1011 WP_041982173.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MT990_RS12235 (MT990_12235) - 2655556..2656638 (+) 1083 WP_243821774.1 FAD:protein FMN transferase -
  MT990_RS12240 (MT990_12240) rcrQ 2656790..2658628 (-) 1839 WP_212104047.1 ABC transporter ATP-binding protein Regulator
  MT990_RS12245 (MT990_12245) rcrP 2658697..2660568 (-) 1872 WP_243821775.1 ABC transporter ATP-binding protein Regulator
  MT990_RS12250 (MT990_12250) - 2661338..2661493 (+) 156 WP_174773374.1 hypothetical protein -
  MT990_RS12255 (MT990_12255) - 2661499..2661759 (-) 261 WP_154536221.1 hypothetical protein -
  MT990_RS12260 (MT990_12260) - 2662119..2662376 (-) 258 WP_214646475.1 hypothetical protein -
  MT990_RS12265 (MT990_12265) - 2662461..2662991 (-) 531 WP_065436543.1 MarR family transcriptional regulator -
  MT990_RS12270 (MT990_12270) - 2663145..2664668 (-) 1524 WP_136500727.1 amino acid permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68018.55 Da        Isoelectric Point: 5.4642

>NTDB_id=670458 MT990_RS12245 WP_243821775.1 2658697..2660568(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JRPT]
MFRIMKYLSKAEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLSVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMTDSSTASGRKRETALLAADKAAQDAGLPA
ERMERVKAAADVAQASEFVARMDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=670458 MT990_RS12245 WP_243821775.1 2658697..2660568(-) (rcrP) [Bifidobacterium longum subsp. infantis strain JRPT]
ATGTTCCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCCTTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCATCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAATGGTCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCTCCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGTTTCACCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAATCGTCGCTGATTAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGATCCGGCGGAGGTCGAGATGACGGACA
GCTCCACCGCCTCCGGCCGCAAGCGCGAGACCGCACTGCTCGCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCATGGATGGCGGATATGC
CGCCGCGATCGCACAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGTGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCCACCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.815

100

0.496