Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MT990_RS12240 Genome accession   NZ_CP094658
Coordinates   2656790..2658628 (-) Length   612 a.a.
NCBI ID   WP_212104047.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain JRPT     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651790..2663628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT990_RS12215 (MT990_12215) - 2652940..2653587 (+) 648 WP_012578649.1 hypothetical protein -
  MT990_RS12220 (MT990_12220) - 2653578..2653955 (+) 378 WP_179960175.1 hypothetical protein -
  MT990_RS12225 (MT990_12225) rsmI 2653982..2654992 (-) 1011 WP_041982173.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MT990_RS12235 (MT990_12235) - 2655556..2656638 (+) 1083 WP_243821774.1 FAD:protein FMN transferase -
  MT990_RS12240 (MT990_12240) rcrQ 2656790..2658628 (-) 1839 WP_212104047.1 ABC transporter ATP-binding protein Regulator
  MT990_RS12245 (MT990_12245) rcrP 2658697..2660568 (-) 1872 WP_243821775.1 ABC transporter ATP-binding protein Regulator
  MT990_RS12250 (MT990_12250) - 2661338..2661493 (+) 156 WP_174773374.1 hypothetical protein -
  MT990_RS12255 (MT990_12255) - 2661499..2661759 (-) 261 WP_154536221.1 hypothetical protein -
  MT990_RS12260 (MT990_12260) - 2662119..2662376 (-) 258 WP_214646475.1 hypothetical protein -
  MT990_RS12265 (MT990_12265) - 2662461..2662991 (-) 531 WP_065436543.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 66981.41 Da        Isoelectric Point: 6.5649

>NTDB_id=670457 MT990_RS12240 WP_212104047.1 2656790..2658628(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JRPT]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=670457 MT990_RS12240 WP_212104047.1 2656790..2658628(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JRPT]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGCCTGCCCGCCATCGTCAACGGCAGGCCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACGCTGGTGGCCCTGTACGCGGGATACGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTTGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGTGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGTCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCACA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGTGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTACAGTTCGGTTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGG
CGGCTCGATTGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCAACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTC
GTCGTTGTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATCCAGAAGGCCATGGATGCGCTGACCGTGGGCCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGAACCACGGCGATGTGATCGAACG
CGGCACCCATGATGAGCTGCTGGCGGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.252

96.078

0.521