Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MMY79_RS18000 Genome accession   NZ_CP094657
Coordinates   3878400..3878726 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter sp. XS-4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3873400..3883726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS17980 (MMY79_17975) - 3873501..3874130 (-) 630 WP_252610686.1 FHA domain-containing protein -
  MMY79_RS17985 (MMY79_17980) gspD 3874170..3876446 (-) 2277 WP_252610688.1 type II secretion system secretin GspD -
  MMY79_RS17990 (MMY79_17985) - 3876488..3877324 (-) 837 WP_252610690.1 type II secretion system protein N -
  MMY79_RS17995 (MMY79_17990) gspN 3877324..3878067 (-) 744 WP_252610692.1 type II secretion system protein N -
  MMY79_RS18000 (MMY79_17995) hns 3878400..3878726 (-) 327 WP_002053185.1 H-NS histone family protein Regulator
  MMY79_RS18005 (MMY79_18000) - 3878921..3879361 (-) 441 WP_252610694.1 thioesterase family protein -
  MMY79_RS18010 (MMY79_18005) - 3879369..3880562 (-) 1194 WP_252610696.1 heme biosynthesis protein HemY -
  MMY79_RS18015 (MMY79_18010) - 3880572..3881414 (-) 843 WP_252610698.1 hypothetical protein -
  MMY79_RS18020 (MMY79_18015) - 3881423..3882190 (-) 768 WP_252610699.1 uroporphyrinogen-III synthase -
  MMY79_RS18025 (MMY79_18020) hemC 3882194..3883111 (-) 918 WP_252610701.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=670443 MMY79_RS18000 WP_002053185.1 3878400..3878726(-) (hns) [Acinetobacter sp. XS-4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=670443 MMY79_RS18000 WP_002053185.1 3878400..3878726(-) (hns) [Acinetobacter sp. XS-4]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGCGCTCAAAAGCGTAAGAAAACAACACGTAAATCTGTTGAGCCACGTTACCGCAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991