Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MMY79_RS17475 Genome accession   NZ_CP094657
Coordinates   3763497..3765725 (+) Length   742 a.a.
NCBI ID   WP_252610577.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758497..3770725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS17445 (MMY79_17440) lnt 3758521..3760080 (+) 1560 WP_252610568.1 apolipoprotein N-acyltransferase -
  MMY79_RS17450 (MMY79_17445) - 3760082..3760420 (-) 339 WP_174746156.1 tRNA-binding protein -
  MMY79_RS17455 (MMY79_17450) - 3760664..3760924 (+) 261 WP_252610570.1 DUF2798 domain-containing protein -
  MMY79_RS17460 (MMY79_17455) - 3760989..3761333 (-) 345 WP_252610572.1 hypothetical protein -
  MMY79_RS17465 (MMY79_17460) gspG 3761604..3762119 (-) 516 WP_252613561.1 type II secretion system major pseudopilin GspG -
  MMY79_RS17470 (MMY79_17465) gspF 3762143..3763348 (-) 1206 WP_252610575.1 type II secretion system inner membrane protein GspF -
  MMY79_RS17475 (MMY79_17470) priA 3763497..3765725 (+) 2229 WP_252610577.1 primosomal protein N' Machinery gene
  MMY79_RS17480 (MMY79_17475) - 3765802..3767646 (+) 1845 WP_252610579.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MMY79_RS17485 (MMY79_17480) - 3767813..3768688 (+) 876 WP_252610581.1 Hsp33 family molecular chaperone HslO -
  MMY79_RS17490 (MMY79_17485) - 3768826..3769437 (+) 612 WP_004794957.1 LysE family translocator -
  MMY79_RS17495 (MMY79_17490) - 3769585..3770541 (+) 957 WP_252610583.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84244.14 Da        Isoelectric Point: 8.5600

>NTDB_id=670440 MMY79_RS17475 WP_252610577.1 3763497..3765725(+) (priA) [Acinetobacter sp. XS-4]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAHVGSRVAISFGRQNLIGIITEKVNPHEPFTGKFQLKAISELL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDDVETLLKRSVKQQDAYQILKLHPS
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPVQLAQMPLTLNEDQKQATQHVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=670440 MMY79_RS17475 WP_252610577.1 3763497..3765725(+) (priA) [Acinetobacter sp. XS-4]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCCATTTCATTTGGACGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTAAATCCACATGAGCCATTTACGGGTAAATTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGAAGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAATTGGTGA
GGTCATGCAAACAGCTCTTCCGGCTTTATTGCGTCAGGGTAAACCGATGGATGTTTTATTCCATCTATGGAAAATTACTC
CCTGTGACGATGTCGAAACTCTGCTTAAACGCTCGGTGAAGCAACAAGATGCTTATCAGATTTTAAAATTACATCCTTCG
GGAACAACAGAAAATATTCTGAATTTAAGTGGTGTAGAAACTGCAACGCTTAAAGCACTTCAAAAGAAAGGGCTGGTAGA
CTGTACGCTCGAACCACATGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGATCAAA
AGCAAGCGACTCAACATGTCATTAAAGCCCAGCATCAATACCAAGCATTTTTGCTCGATGGTTTAACAGGTAGCGGTAAA
ACAGAAGTTTATTTGCACATCATGCATGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTGTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACTATTTCCCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTTTATTGCACTCTGGCTTAAATGACTCTA
AACGCTTGCAAGCATGGCAACAGGCACAAACCGGAAAAGCGTCTATTATTTTAGGGACACGATCTGCCATCTATACGCCA
CTGCCACGTTTGGGATTGATCATTTTAGATGAAGAACATGATCTGTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCACTATACCGCGGTCACTTGCAAAACTGCCCTGTGATTTTAGGATCAGCAACACCAAGTATTGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACGTCCCTGCAACTCAACAAACGTGCTGGCCATGCACTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATCAGTCAGCCCCTTATTGAACAAATCAAACATACATTAGCTAG
GAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACTTTGCACACCCAACCTTATTCTTATCTACATTGCCACCACTGTGGAACCATT
CATCGCTTACCCGATCATTGTCCTGAATGTCAGCAAAAAAGCTTAAAAACCTTAGGGGCAGGAACCGCTAAGGTCGAAGA
ACACTTACAAGAACTATTTCCAGAGTATGATGTCATTCGGGTCGATCGTGACAGTACCAGTCGTGTCGGGAGCTGGCAAA
AAATCTACGACCGTATTCATCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGCCATCATTTTCCA
CATGTCACATTGGTTGCCATTTTAGATATTGATGCAGGTTTACTCAGCGTAGACATCCGTGCGCCAGAACGTACGGCGCA
GCTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGTGAACACAAAGGCCATGTATATTTACAAACATTAAGACCTGACC
ATCCATTACTCACCACGCTCATCGAAAAAGATTATCGGGCAGTAGCCAAACAGACTCTTGCAGAACGTAAAGTTGCTTTG
CTGCCGCCTTATCGCTATGCAGTACTAATACGTGCAGAATCCAAAGATCGTGACTATACCTTACAATTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCGCCGATGGAACGTAAAGCAG
GACGCTACCGTGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACACTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTTCATGCCCCAAGACAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.687

100

0.957