Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MMY79_RS02385 Genome accession   NZ_CP094657
Coordinates   481538..482422 (+) Length   294 a.a.
NCBI ID   WP_252611715.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476538..487422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS02360 (MMY79_02360) - 476851..478098 (-) 1248 WP_016140126.1 YihY family inner membrane protein -
  MMY79_RS02365 (MMY79_02365) wrbA 478459..479067 (+) 609 WP_252611711.1 NAD(P)H:quinone oxidoreductase -
  MMY79_RS02370 (MMY79_02370) - 479115..479690 (-) 576 WP_004789579.1 xanthine phosphoribosyltransferase -
  MMY79_RS02375 (MMY79_02375) - 479762..480475 (-) 714 WP_252611713.1 DUF3108 domain-containing protein -
  MMY79_RS02380 (MMY79_02380) - 480634..481305 (-) 672 WP_202743268.1 hypothetical protein -
  MMY79_RS02385 (MMY79_02385) tonB2 481538..482422 (+) 885 WP_252611715.1 TonB family protein Machinery gene
  MMY79_RS02390 (MMY79_02390) ybeY 482523..483005 (-) 483 WP_252611717.1 rRNA maturation RNase YbeY -
  MMY79_RS02395 (MMY79_02395) - 483015..484103 (-) 1089 WP_252611719.1 PhoH family protein -
  MMY79_RS02400 (MMY79_02400) miaB 484141..485592 (-) 1452 WP_252611721.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33662.20 Da        Isoelectric Point: 9.8339

>NTDB_id=670422 MMY79_RS02385 WP_252611715.1 481538..482422(+) (tonB2) [Acinetobacter sp. XS-4]
MLNKRNLSIKPFYHWWQDRVFIAATILAIFLHIFVLLIHFAMPDPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FREAHRTSSDTPNPMPNNASTGNAQLESLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGVQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=670422 MMY79_RS02385 WP_252611715.1 481538..482422(+) (tonB2) [Acinetobacter sp. XS-4]
ATGTTGAATAAAAGAAATCTATCCATAAAGCCTTTTTACCATTGGTGGCAAGACAGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTCCTGCATATTTTTGTGTTGCTCATCCACTTTGCTATGCCAGACCCGTCTGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAGGCAGACTTTTTGGCACAAGCGGACCAACAAGGTTCGGGTGCA
TTTCGTGAAGCACACCGTACTTCTAGCGATACTCCAAATCCGATGCCTAATAATGCATCAACTGGAAATGCACAGTTAGA
AAGTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACGGTTTTGAGTTGGCAAAAAC
AAGCTGATGCGAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCGGCGATGGTTGCGAGC
CTTGAAGCACAATATTTACAACGTAGACAAGATTTCAGTCGGCAACAAAAAATCAAAACAGTAGATGGAGTTCAAGCGAA
GAAAGATGCCTCAGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAACAACAACAGCTAAGAGGTGAAGTTCGCTTAATGGTGATTTTGAATGCTCAAGGCGGGATTCGTGCAATCCGATTG
CTTGAAAGCTCAGGCCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCGCCATTTGGGCATTTCGA
TGCTAATATGAAAGATATTTCTGAATTACGGATTGTACGTACGTGGCGTTTCGATCCGGCTCAAGCAGAATTTGAAGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878