Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MOJ78_RS13190 Genome accession   NZ_CP094656
Coordinates   2573253..2574980 (-) Length   575 a.a.
NCBI ID   WP_304977810.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. AL-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2568253..2579980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOJ78_RS13170 (MOJ78_13145) - 2569869..2570105 (+) 237 WP_304977806.1 DUF2627 domain-containing protein -
  MOJ78_RS13175 (MOJ78_13150) yvfG 2570117..2570326 (+) 210 WP_304977807.1 protein YvfG -
  MOJ78_RS13180 (MOJ78_13155) spo0A 2570428..2571213 (-) 786 WP_304977808.1 sporulation transcription factor Spo0A -
  MOJ78_RS13185 (MOJ78_13160) spoIVB 2571631..2572944 (-) 1314 WP_304977809.1 SpoIVB peptidase -
  MOJ78_RS13190 (MOJ78_13165) recN 2573253..2574980 (-) 1728 WP_304977810.1 DNA repair protein RecN Machinery gene
  MOJ78_RS13195 (MOJ78_13170) ahrC 2574993..2575442 (-) 450 WP_304977811.1 transcriptional regulator AhrC/ArgR -
  MOJ78_RS13200 (MOJ78_13175) - 2575673..2576503 (-) 831 WP_304977812.1 TlyA family RNA methyltransferase -
  MOJ78_RS13205 (MOJ78_13180) dxs 2576505..2578397 (-) 1893 WP_304977813.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MOJ78_RS13210 (MOJ78_13185) - 2578407..2579015 (-) 609 WP_304977814.1 hypothetical protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65278.20 Da        Isoelectric Point: 5.2726

>NTDB_id=670391 MOJ78_RS13190 WP_304977810.1 2573253..2574980(-) (recN) [Alkalihalobacillus sp. AL-G]
MLAELSIRNFAIIDEITVPFEEGLTVLTGETGAGKSIIIDAIGLLIGGRGSSEFVRHGTDRAEIEGLFHIQPNHPSVRKC
QELGIELSDEMVVLKRDMTGSGKSICRVNGKLVTLAILREIGQSLIDIHGQHEHQFLLQSDKHLSMLDQFNSKALSRSLA
EYKHLYERYTNTKKQLYHLTENEQEVAHRIDLIQYQLNEISKANLQPKEDEQLQEEKQRLNNFERLFQSANDSYQSLYGE
QKGIDYLGLAMSHLEDVAELDPARILLKEAVANAFYMVEDAAHQLRDYIDTLEFDPNRIDEIEERLHEITALKRKYGHTV
EEILEYSSKIEEELHTFTNKDSRIQSLKDDLKEVGHDLYVEAKNMTRLRMDTAKKLEKAIHSELQDLYMEKTTFKVSFSE
SVGKFDADPEIDGKPIHFTKQGIDEVQFLISTNPGEPLKPLVKIASGGELSRIILAMKAIFSNQQQLSSIIFDEVDTGVS
GRVAQAIAEKIQKLSAGSQVLCITHLPQVAAMADRHLYIEKQLKNDRTFTNVKPLSYEEKVKEIGRMISGVEITELTKQH
AKEMIQFADEVKVSS

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=670391 MOJ78_RS13190 WP_304977810.1 2573253..2574980(-) (recN) [Alkalihalobacillus sp. AL-G]
ATGCTTGCCGAGCTTTCTATACGTAATTTTGCAATTATTGACGAAATCACGGTACCCTTTGAGGAAGGGCTTACTGTTTT
AACAGGGGAAACAGGTGCAGGGAAATCGATCATCATCGATGCAATCGGCTTATTAATCGGCGGCCGGGGTTCTTCTGAAT
TTGTACGACACGGAACAGATCGTGCAGAAATAGAAGGACTATTTCATATTCAACCAAATCATCCCTCAGTACGGAAATGT
CAAGAACTTGGTATTGAGTTATCAGATGAAATGGTCGTTTTAAAACGCGATATGACCGGCTCGGGGAAGAGTATTTGCAG
AGTGAATGGAAAGCTTGTCACACTAGCGATACTTCGAGAAATCGGACAATCTTTAATCGATATACACGGCCAGCACGAGC
ATCAATTCTTACTCCAAAGCGATAAGCACTTAAGTATGCTTGACCAATTCAACTCTAAAGCATTGAGTCGGTCTCTAGCC
GAATACAAGCATTTATATGAACGTTATACAAACACGAAAAAGCAATTGTATCATTTAACTGAAAACGAACAGGAAGTAGC
CCATAGAATAGATTTAATACAATATCAATTAAATGAAATTTCAAAAGCAAACCTTCAACCGAAGGAAGATGAACAATTAC
AAGAGGAAAAGCAACGTCTCAATAACTTTGAGCGGTTGTTTCAATCTGCGAATGATTCTTATCAATCTTTATACGGAGAG
CAGAAAGGGATCGATTATTTAGGTTTAGCAATGAGTCATTTGGAGGACGTAGCGGAGCTTGATCCTGCTCGGATTCTTTT
AAAGGAAGCTGTTGCAAATGCTTTTTATATGGTAGAGGACGCTGCCCATCAGCTTCGAGATTATATTGACACATTAGAGT
TCGATCCGAATCGAATTGACGAGATTGAGGAACGGTTACACGAAATTACTGCGTTAAAACGAAAATATGGTCATACAGTT
GAAGAAATTCTCGAATATAGCTCTAAGATTGAAGAAGAGCTTCATACGTTTACGAATAAAGATAGCCGAATCCAATCGCT
AAAGGACGATTTAAAAGAAGTTGGCCATGATTTGTACGTTGAGGCGAAAAATATGACTCGCTTACGAATGGATACCGCTA
AGAAGTTAGAGAAAGCTATACATAGTGAGCTTCAAGATCTGTATATGGAAAAAACCACATTCAAGGTTTCATTTTCAGAA
TCGGTTGGTAAGTTCGATGCAGATCCGGAAATAGACGGTAAACCTATACATTTTACAAAACAAGGTATCGATGAGGTTCA
GTTCCTTATATCTACAAATCCAGGTGAGCCTTTAAAACCACTCGTGAAGATTGCCTCTGGTGGTGAATTATCCAGAATTA
TTCTGGCAATGAAGGCAATCTTTTCAAATCAACAACAGTTATCTTCGATCATATTCGATGAAGTAGATACTGGGGTAAGC
GGCCGGGTCGCTCAAGCAATTGCTGAAAAAATTCAAAAGCTTTCTGCAGGCTCACAAGTTCTCTGCATTACTCATTTACC
TCAAGTTGCAGCGATGGCTGACAGACATCTATATATTGAGAAGCAGTTGAAAAATGACCGAACTTTTACAAATGTGAAGC
CACTATCGTATGAGGAAAAAGTGAAGGAAATTGGTCGTATGATCTCGGGCGTTGAAATTACGGAACTTACGAAACAGCAC
GCAAAGGAAATGATTCAGTTCGCTGATGAAGTCAAGGTCAGCTCGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.826

100

0.598