Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOJ78_RS00710 Genome accession   NZ_CP094656
Coordinates   135787..137157 (+) Length   456 a.a.
NCBI ID   WP_304979343.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. AL-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 130787..142157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOJ78_RS00690 (MOJ78_00685) - 130895..131359 (+) 465 WP_304979339.1 CtsR family transcriptional regulator -
  MOJ78_RS00695 (MOJ78_00690) - 131385..131912 (+) 528 WP_304979340.1 UvrB/UvrC motif-containing protein -
  MOJ78_RS00700 (MOJ78_00695) - 131916..132989 (+) 1074 WP_304979341.1 protein arginine kinase -
  MOJ78_RS00705 (MOJ78_00700) clpC 133003..135438 (+) 2436 WP_304979342.1 ATP-dependent protease ATP-binding subunit ClpC -
  MOJ78_RS00710 (MOJ78_00705) radA 135787..137157 (+) 1371 WP_304979343.1 DNA repair protein RadA Machinery gene
  MOJ78_RS00715 (MOJ78_00710) disA 137161..138234 (+) 1074 WP_304979344.1 DNA integrity scanning diadenylate cyclase DisA -
  MOJ78_RS00720 (MOJ78_00715) - 138422..139531 (+) 1110 WP_304979345.1 PIN/TRAM domain-containing protein -
  MOJ78_RS00725 (MOJ78_00720) ispD 139604..140302 (+) 699 WP_304979346.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MOJ78_RS00730 (MOJ78_00725) ispF 140295..140768 (+) 474 WP_304979347.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49743.93 Da        Isoelectric Point: 7.4840

>NTDB_id=670370 MOJ78_RS00710 WP_304979343.1 135787..137157(+) (radA) [Alkalihalobacillus sp. AL-G]
MAKRKTTFLCQDCGYDSPKWMGKCPGCSKWNTMVEEVIQQEKGHRRSFNTGGTSQKPEPITKIKSEKEPRIDTKISELNR
VLGGGVVPGSLVLVGGDPGIGKSTLLLQASAKLAGNAHTVLYISGEESIKQTKLRAQRLEINDDNLYVHAETDMDLIEKA
IEDVKPSLLIIDSIQTVYRSEVTSAPGSVSQVRECTSHFMRISKTKGIATFIVGHVTKEGSIAGPRLLEHMVDAVLYFEG
ERHHTYRILRAVKNRFGSTNEIGVFEMKEEGLDEVQNPSEVFLEERSNGAAGSAIVASIEGTRPVLVEIQALVSPTSFGN
PRRMGKGIDHNRVSLLMAVLEKRVGLLLQNQDAYVNVAGGVRLDEPAIDLAIAVSIASSFRDRPSQPTDVFIGEIGLTGE
VRRVSRVEQRVHEVAKLGFKRVILPEKNLGGWTVPSGIEVVGVATVEDTLRQGLGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=670370 MOJ78_RS00710 WP_304979343.1 135787..137157(+) (radA) [Alkalihalobacillus sp. AL-G]
ATGGCAAAACGAAAAACAACCTTTTTATGCCAGGATTGCGGGTACGATTCGCCAAAGTGGATGGGGAAATGCCCAGGCTG
TAGCAAGTGGAATACGATGGTGGAGGAAGTCATCCAACAGGAAAAAGGACATCGACGTTCTTTCAACACGGGTGGCACTA
GTCAAAAACCAGAACCAATTACAAAAATTAAAAGTGAAAAAGAGCCACGAATAGATACGAAAATAAGTGAGCTTAATCGT
GTGCTTGGTGGTGGAGTTGTTCCTGGGTCGCTCGTTCTTGTCGGTGGGGACCCTGGTATCGGGAAATCGACACTTCTGCT
TCAAGCATCCGCCAAGCTTGCTGGGAACGCACATACAGTACTTTATATATCCGGTGAGGAATCAATTAAACAAACGAAGC
TCAGAGCTCAACGGCTCGAAATCAATGACGATAACTTGTATGTTCATGCTGAAACAGATATGGACCTGATTGAAAAAGCA
ATTGAAGATGTAAAACCGAGCTTATTGATCATTGACTCTATTCAAACTGTATATCGTTCTGAAGTTACATCTGCTCCAGG
AAGTGTTTCACAGGTCCGGGAATGTACCTCTCATTTTATGAGAATCTCGAAGACAAAAGGAATTGCGACATTTATTGTTG
GACACGTTACTAAAGAAGGATCGATCGCAGGCCCACGTTTGTTAGAGCATATGGTTGATGCAGTCCTTTATTTTGAAGGG
GAGCGCCATCATACATATCGCATTTTGCGGGCAGTCAAAAATAGGTTCGGGTCGACAAATGAAATTGGTGTATTTGAAAT
GAAAGAAGAAGGATTAGATGAGGTGCAAAACCCGTCCGAGGTATTCCTTGAGGAGCGTTCGAATGGAGCAGCTGGGTCAG
CCATTGTCGCATCAATCGAAGGCACGAGACCGGTACTTGTTGAGATTCAAGCTCTTGTTTCACCAACAAGCTTTGGGAAT
CCGAGACGTATGGGGAAAGGTATCGATCATAACCGTGTTTCGTTACTGATGGCCGTACTTGAAAAACGTGTTGGGTTATT
GTTGCAAAACCAAGATGCATACGTAAATGTGGCTGGTGGTGTAAGGCTGGATGAACCAGCGATTGATTTAGCGATTGCCG
TTAGTATCGCATCCAGTTTTCGCGATCGACCATCGCAGCCTACCGATGTTTTTATTGGTGAAATTGGACTAACTGGAGAA
GTAAGACGGGTTTCACGAGTGGAACAAAGGGTACATGAAGTAGCAAAGCTTGGATTTAAGCGTGTCATTCTTCCAGAAAA
AAACTTGGGAGGATGGACGGTGCCAAGTGGAATTGAAGTTGTAGGCGTAGCGACTGTTGAAGATACGCTTCGTCAAGGCT
TGGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(59-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.581

100

0.739
  radA Streptococcus pneumoniae Rx1

60.841

99.123

0.603
  radA Streptococcus pneumoniae D39

60.841

99.123

0.603
  radA Streptococcus pneumoniae R6

60.841

99.123

0.603
  radA Streptococcus pneumoniae TIGR4

60.841

99.123

0.603
  radA Streptococcus mitis SK321

60.841

99.123

0.603
  radA Streptococcus mitis NCTC 12261

60.841

99.123

0.603