Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG430_RS31540 Genome accession   NZ_CP109055
Coordinates   7121711..7122316 (+) Length   201 a.a.
NCBI ID   WP_327359302.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01304     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7116711..7127316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG430_RS31535 (OG430_31530) tig 7119398..7120783 (+) 1386 WP_327356029.1 trigger factor -
  OG430_RS31540 (OG430_31535) clpP 7121711..7122316 (+) 606 WP_327359302.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG430_RS31545 (OG430_31540) clpP 7122363..7123049 (+) 687 WP_327356030.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG430_RS31550 (OG430_31545) clpX 7123250..7124536 (+) 1287 WP_327356031.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG430_RS31555 (OG430_31550) - 7124651..7125673 (-) 1023 WP_327356032.1 hypothetical protein -
  OG430_RS31560 (OG430_31555) - 7125775..7126755 (-) 981 WP_327356033.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21253.07 Da        Isoelectric Point: 4.5594

>NTDB_id=670346 OG430_RS31540 WP_327359302.1 7121711..7122316(+) (clpP) [Streptomyces sp. NBC_01304]
MPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIYLYINSPGGSITAGMAIYDTMQY
IRNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLLTKKRMAQLTAQHTGQSFD
QVTRDSDRDRWFDPEEAKEYGLIDEVITTASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670346 OG430_RS31540 WP_327359302.1 7121711..7122316(+) (clpP) [Streptomyces sp. NBC_01304]
ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGGCCGTGGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTTCTCCTTGCCGCTGAGCCGG
ACAAGGACATTTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCGGGCATGGCGATCTACGACACCATGCAGTAC
ATCCGGAACGACGTGGTGACGATCGCGATGGGCATGGCCGCCTCGATGGGCCAGTTCCTGCTGAGTGCCGGCACCCCGGG
CAAGCGCTTCGCGCTGCCCAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCCGGTTCTGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCTCACCAAGAAGCGCATGGCCCAGCTCACCGCCCAGCACACCGGCCAGAGCTTCGAC
CAGGTCACCCGCGACTCCGACCGCGACCGCTGGTTCGACCCGGAGGAGGCCAAGGAGTACGGCCTCATCGACGAGGTCAT
CACCACGGCCTCCGGCGTGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.302

85.572

0.507
  clpP Lactococcus lactis subsp. cremoris KW2

53.672

88.06

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.971

85.075

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.107

88.06

0.468
  clpP Streptococcus thermophilus LMD-9

51.429

87.065

0.448
  clpP Streptococcus thermophilus LMG 18311

51.429

87.065

0.448
  clpP Streptococcus mutans UA159

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

51.445

86.07

0.443
  clpP Streptococcus pyogenes MGAS315

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.282

88.06

0.443
  clpP Streptococcus pneumoniae D39

50.282

88.06

0.443
  clpP Streptococcus pneumoniae R6

50.282

88.06

0.443
  clpP Streptococcus pneumoniae TIGR4

50.282

88.06

0.443