Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MP622_RS16235 Genome accession   NZ_CP094643
Coordinates   3423120..3424001 (+) Length   293 a.a.
NCBI ID   WP_016168555.1    Uniprot ID   R9ALW8
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3418120..3429001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS16210 (MP622_16210) - 3418710..3419078 (-) 369 WP_243791815.1 hypothetical protein -
  MP622_RS16215 (MP622_16215) - 3419330..3420394 (-) 1065 WP_243791817.1 sensor domain-containing diguanylate cyclase -
  MP622_RS16220 (MP622_16220) - 3420662..3421237 (-) 576 WP_243791819.1 xanthine phosphoribosyltransferase -
  MP622_RS16225 (MP622_16225) - 3421327..3422010 (-) 684 WP_243793567.1 DUF3108 domain-containing protein -
  MP622_RS17415 - 3421949..3422083 (+) 135 WP_279577670.1 hypothetical protein -
  MP622_RS16230 (MP622_16230) - 3422207..3422890 (-) 684 WP_104441433.1 hypothetical protein -
  MP622_RS16235 (MP622_16235) tonB2 3423120..3424001 (+) 882 WP_016168555.1 TonB family protein Machinery gene
  MP622_RS16240 (MP622_16240) - 3423998..3424303 (-) 306 WP_104441435.1 antibiotic biosynthesis monooxygenase -
  MP622_RS16245 (MP622_16245) ybeY 3424382..3424864 (-) 483 WP_104441436.1 rRNA maturation RNase YbeY -
  MP622_RS16250 (MP622_16250) - 3424883..3425959 (-) 1077 WP_016168552.1 PhoH family protein -
  MP622_RS16255 (MP622_16255) miaB 3425999..3427456 (-) 1458 WP_044739151.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33555.35 Da        Isoelectric Point: 9.9200

>NTDB_id=670344 MP622_RS16235 WP_016168555.1 3423120..3424001(+) (tonB2) [Acinetobacter sp. PK01]
MILNKINYTPLLRTWWKDPIFTTAVGFALALHLAVLAIEFAAPTQQDAAVKEIAVTLRPSEQKVEQADFLAQADQKGSGT
FREAHRMSSDMPAPMLEQSAGEKQMETLQKTQQKRELNFEEKVLMTTLSWQKQAEQTRRKKAMDELNSQFQAKAAMVASL
EAQYLQRQQNFSRQQKIKTVDGIQAKQDVTAAYLEKFRQKVEFYGNRYYPDQAKQQRLAGEVRLMVILNRNGGIRAIRLI
ESSGHDLLDEAAKASVRKAAPFTGFDRNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=670344 MP622_RS16235 WP_016168555.1 3423120..3424001(+) (tonB2) [Acinetobacter sp. PK01]
ATGATCCTGAATAAAATAAATTATACGCCTTTATTGCGCACGTGGTGGAAAGACCCGATTTTTACAACTGCGGTGGGCTT
TGCACTGGCTTTACATCTCGCTGTTTTAGCTATTGAATTTGCTGCACCCACACAACAGGATGCGGCGGTGAAGGAAATTG
CAGTGACGTTGCGACCGAGCGAACAGAAGGTTGAACAAGCTGATTTTCTAGCACAAGCAGATCAGAAAGGTTCAGGAACA
TTCCGCGAAGCACATCGAATGTCGAGTGACATGCCAGCACCCATGCTGGAGCAAAGTGCGGGTGAAAAGCAGATGGAAAC
CCTGCAAAAAACCCAACAAAAGCGTGAACTGAATTTTGAAGAAAAAGTCTTGATGACCACGCTGAGTTGGCAAAAGCAGG
CTGAACAAACTCGTCGGAAAAAAGCGATGGATGAACTAAACAGTCAGTTTCAAGCCAAAGCTGCCATGGTAGCAAGTCTG
GAAGCACAATATTTACAGCGTCAACAGAATTTTAGCCGCCAACAGAAAATTAAAACGGTCGATGGTATTCAAGCCAAGCA
AGACGTTACAGCGGCATATTTAGAAAAATTTAGACAGAAAGTTGAATTTTACGGCAACCGTTATTATCCAGATCAAGCAA
AACAACAGCGGTTGGCAGGTGAAGTTCGTTTGATGGTCATTCTGAACCGTAATGGTGGGATTCGGGCCATTCGTTTAATT
GAAAGCTCTGGACATGACTTACTTGATGAAGCCGCGAAAGCATCGGTACGTAAAGCGGCACCATTTACTGGATTTGACCG
TAATATGAAAGATATCTCCGAGTTACGCATTGTCCGAACATGGCGTTTTGACCCTGCGGAAGCCGAGTTTGAAGTCCATT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9ALW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.857

95.563

0.696