Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG430_RS24970 Genome accession   NZ_CP109055
Coordinates   5634267..5635388 (-) Length   373 a.a.
NCBI ID   WP_327354822.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5629267..5640388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG430_RS24960 (OG430_24975) gyrB 5631374..5633437 (-) 2064 WP_327354819.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG430_RS24965 (OG430_24980) - 5633725..5634270 (-) 546 WP_327354820.1 DciA family protein -
  OG430_RS24970 (OG430_24985) recF 5634267..5635388 (-) 1122 WP_327354822.1 DNA replication/repair protein RecF Machinery gene
  OG430_RS24975 (OG430_24990) gnd 5635444..5636319 (-) 876 WP_327354823.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG430_RS24980 (OG430_24995) dnaN 5636456..5637586 (-) 1131 WP_327354824.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40674.37 Da        Isoelectric Point: 7.1481

>NTDB_id=670331 OG430_RS24970 WP_327354822.1 5634267..5635388(-) (recF) [Streptomyces sp. NBC_01304]
MHVTHLSLADFRSYGRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAIIRAAVRQGERQ
QLVELELNPGRANRARINRSSQVKPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLARVGAELLAQRLDLIATLQPLADKAYEQLAPGGGPIALEYKPSAQGPGL
TREELYEQVLAALADVRKQEIERGVTLVGPHRDDLLLNLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLTGTRYAVSGGEVSRV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=670331 OG430_RS24970 WP_327354822.1 5634267..5635388(-) (recF) [Streptomyces sp. NBC_01304]
ATGCACGTCACGCATCTGTCGCTCGCCGACTTCCGCTCGTACGGCCGGGTCGAGGTCCCACTCGACCCGGGCGTCACCGC
GTTCGTGGGCCCCAACGGTCAGGGCAAGACCAACCTCGTCGAGGCGGTCGGCTATCTCGCCACGCTCGGCAGCCACCGGG
TCTCGTCCGACGCTCCGCTCGTCCGCATGGGCGCCGACCGCGCGATCATCCGAGCCGCGGTCCGGCAGGGCGAGCGACAG
CAGCTGGTCGAGCTGGAGCTCAACCCGGGGCGCGCCAACCGCGCCCGCATCAACCGGTCTTCGCAGGTCAAGCCACGTGA
CGTACTGGGAATCGTCCGGACGGTCCTGTTCGCGCCCGAGGACCTCGCCCTGGTCAAGGGCGACCCCGGCGAGCGCCGGC
GCTTCCTCGACGAACTGATTACCGCCCGGTCCCCGCGGATGGCGGGCGTGCGTTCCGACTACGAGCGCGTCCTCAAGCAG
CGCAACACCCTGCTGAAGTCGGCCGCCATGGCCCGCAGGCACGGCGGCCGCTCGATGGACATGTCCACGCTGGACGTCTG
GGACCAGCATCTGGCGCGCGTGGGCGCCGAGTTGCTGGCCCAGCGGCTCGACCTGATCGCCACGCTGCAGCCGCTCGCCG
ACAAGGCGTACGAGCAACTGGCGCCCGGCGGCGGGCCGATCGCCCTGGAGTACAAGCCGTCGGCACAGGGCCCCGGGCTG
ACGCGCGAGGAGCTCTACGAGCAGGTCCTGGCCGCACTCGCCGACGTACGCAAACAGGAGATCGAGCGGGGCGTGACCCT
GGTCGGGCCGCACCGCGACGATCTGCTCCTGAACCTCGGGCAGTTGCCCGCGAAGGGGTACGCCAGCCATGGCGAGTCCT
GGTCGTACGCGCTGGCCCTGCGCCTCGCCTCGTACGACCTGCTGCGGGCCGAGGGCAATGAGCCGGTCCTGGTGCTCGAC
GACGTCTTCGCCGAGCTGGACGCGCGGCGGCGCGAGCGGCTCGCGGAGCTGGTGGCTCCGGGTGAGCAGGTCCTGGTGAC
GGCGGCGGTCGACGACGACGTGCCGGGCGTACTGACGGGCACGCGCTATGCCGTGTCCGGAGGCGAGGTGAGCCGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.244

94.638

0.362