Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MP622_RS12855 Genome accession   NZ_CP094643
Coordinates   2724061..2724387 (-) Length   108 a.a.
NCBI ID   WP_016168455.1    Uniprot ID   R9AQ65
Organism   Acinetobacter sp. PK01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719061..2729387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS12835 (MP622_12835) - 2719284..2719955 (-) 672 WP_243791272.1 FHA domain-containing protein -
  MP622_RS12840 (MP622_12840) gspD 2720027..2722282 (-) 2256 WP_243791273.1 type II secretion system secretin GspD -
  MP622_RS12845 (MP622_12845) - 2722325..2723152 (-) 828 WP_243791275.1 type II secretion system protein N -
  MP622_RS12850 (MP622_12850) gspN 2723152..2723895 (-) 744 WP_243791277.1 type II secretion system protein N -
  MP622_RS12855 (MP622_12855) hns 2724061..2724387 (-) 327 WP_016168455.1 H-NS histone family protein Regulator
  MP622_RS12860 (MP622_12860) - 2724538..2724966 (-) 429 WP_016168456.1 thioesterase family protein -
  MP622_RS12865 (MP622_12865) - 2724975..2726168 (-) 1194 WP_016168457.1 hypothetical protein -
  MP622_RS12870 (MP622_12870) - 2726170..2727021 (-) 852 WP_016168458.1 hypothetical protein -
  MP622_RS12875 (MP622_12875) - 2727018..2727797 (-) 780 WP_016168459.1 uroporphyrinogen-III synthase -
  MP622_RS12880 (MP622_12880) hemC 2727801..2728718 (-) 918 WP_026441111.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12324.16 Da        Isoelectric Point: 6.4258

>NTDB_id=670323 MP622_RS12855 WP_016168455.1 2724061..2724387(-) (hns) [Acinetobacter sp. PK01]
MMPDISNLSVEELKRLQVEAEALIVSKKDQAIEDAYTQIMDIADKVGLSIEQILEFGATKRKKTTRKSVEPRYRNKSDAS
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=670323 MP622_RS12855 WP_016168455.1 2724061..2724387(-) (hns) [Acinetobacter sp. PK01]
ATGATGCCAGACATTAGTAATTTATCTGTAGAAGAGTTAAAGCGTTTACAAGTAGAAGCGGAAGCCTTAATCGTTTCTAA
AAAAGATCAGGCAATTGAAGATGCATATACTCAGATTATGGATATTGCTGATAAAGTGGGTTTGAGTATTGAGCAAATCT
TAGAGTTTGGCGCAACTAAACGTAAGAAAACGACTCGTAAATCTGTAGAACCACGTTATCGCAATAAATCAGATGCATCA
GAAACTTGGACAGGCCGTGGTAAACAACCTCGCTGGCTAGTGGCTGAATTGGAAAAAGGTGCAAAACTTGAAGATTTTCT
TATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AQ65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843