Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MP622_RS12345 Genome accession   NZ_CP094643
Coordinates   2613529..2615751 (+) Length   740 a.a.
NCBI ID   WP_243791192.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608529..2620751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS12320 (MP622_12320) - 2608614..2609453 (+) 840 WP_044740572.1 CBS domain-containing protein -
  MP622_RS12325 (MP622_12325) lnt 2609450..2611009 (+) 1560 WP_243791185.1 apolipoprotein N-acyltransferase -
  MP622_RS12330 (MP622_12330) - 2611082..2611426 (-) 345 WP_243791187.1 hypothetical protein -
  MP622_RS12335 (MP622_12335) gspG 2611702..2612139 (-) 438 WP_243791189.1 type II secretion system major pseudopilin GspG -
  MP622_RS12340 (MP622_12340) gspF 2612171..2613376 (-) 1206 WP_243791190.1 type II secretion system inner membrane protein GspF -
  MP622_RS12345 (MP622_12345) priA 2613529..2615751 (+) 2223 WP_243791192.1 primosomal protein N' Machinery gene
  MP622_RS12350 (MP622_12350) - 2615807..2617648 (+) 1842 WP_243791194.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MP622_RS12355 (MP622_12355) - 2617699..2618574 (+) 876 WP_016168367.1 Hsp33 family molecular chaperone HslO -
  MP622_RS12360 (MP622_12360) - 2618874..2619338 (+) 465 WP_104441177.1 DUF2147 domain-containing protein -
  MP622_RS12365 (MP622_12365) - 2619490..2620446 (+) 957 WP_243791196.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84192.08 Da        Isoelectric Point: 8.6859

>NTDB_id=670320 MP622_RS12345 WP_243791192.1 2613529..2615751(+) (priA) [Acinetobacter sp. PK01]
MPNTVSPPFVPYRIRVAVPAHVYDCFDYQISAEDYAQAKVGARVAVPFGSRNLIGVIMQKLTPDTPENPKFKLKPIQALL
DDDAILDSKVLTLLTWAAQYYQFPIGEVVHSALPTLLRQGKPYDLLAHMWRLLDQNADEKIKRSEKQQHAYKILKLHPTG
TSENILNLAGIETATLKALEKKGICEAYLEQKDFSPQALSLAQMPLTANPDQKHAIQQVLKSLSSYHAYLLDGLTGSGKT
EVYLQIMYEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLTDAKRLQAWQSAQTGKASIILGTRSAIYTPL
HNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSMESYALADQGKLTRLELNERAGTALLPKLHI
LDLKVGRKQHGFSQFLLDEMHKRLARKEQVLIFLNRRGYAPVLICESCAWQAKCPHCDANFTLHTQPYQHLHCHHCGTIH
RMPDHCPQCHHTELKPIGMGTAKVEESLKELFPEFEVIRVDRDSTSRVGSWQKIYDRIQKSEPIILLGTQMLAKGHHFPY
VSLVAILDIDSGLLSVDFRAPERTAQLIVQVAGRAGRGEKKGDVYLQTLRPEHPLLHTLVDGDYRQFARQTLKERQQALF
PPYRYAALIRCESKSQEQNQQYLTEHAQQLRQISELNIDIWGPIPAPMERKAGRYQAHMVLFSQDRARLHYYLRAWWQNM
LQHKPASMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=670320 MP622_RS12345 WP_243791192.1 2613529..2615751(+) (priA) [Acinetobacter sp. PK01]
ATGCCAAACACAGTATCGCCCCCTTTCGTGCCTTATCGGATTCGCGTCGCCGTTCCAGCCCATGTTTACGATTGCTTCGA
CTATCAGATTTCCGCAGAGGATTATGCGCAGGCGAAAGTCGGAGCGCGTGTTGCTGTGCCCTTTGGGTCTCGAAATTTAA
TTGGGGTGATTATGCAAAAACTCACACCTGATACTCCTGAGAATCCCAAATTTAAGCTAAAACCCATTCAAGCTTTGCTA
GATGACGATGCCATTCTAGACAGTAAAGTTTTAACTTTGTTGACATGGGCAGCACAATATTATCAATTTCCGATTGGTGA
AGTGGTACACAGTGCTTTGCCCACCTTATTACGTCAAGGTAAACCCTATGATCTGTTGGCACATATGTGGCGATTGCTAG
ATCAAAATGCAGATGAAAAAATTAAGCGCTCAGAGAAACAACAACATGCTTATAAAATTTTAAAGCTACATCCTACAGGT
ACATCTGAAAATATTCTGAATTTAGCGGGCATTGAAACCGCCACTTTAAAAGCTTTGGAAAAGAAAGGCATCTGTGAGGC
TTATTTAGAACAAAAAGATTTTAGTCCACAAGCCCTGAGTTTGGCGCAAATGCCTCTGACCGCCAACCCCGATCAAAAGC
ATGCCATTCAGCAGGTACTGAAATCACTCTCGTCTTATCATGCCTATTTACTGGATGGTTTAACAGGTAGCGGTAAAACT
GAAGTTTACTTGCAAATCATGTACGAAGTCCTGAAGCAAGGCAAACAAGTGTTGGTGTTGGTACCTGAAATTGGTTTGAC
CCCCCAAACGATTAGCCGATTTCAATCGCGTTTCCACTGTCATATTGCCCTGCTGCACTCAGGACTGACCGATGCCAAAC
GCTTGCAAGCATGGCAAAGTGCGCAAACGGGCAAAGCCTCGATTATTTTAGGTACACGTTCTGCCATTTATACCCCATTG
CATAATCTAGGCTTAATCATTTTAGATGAAGAGCATGATCTCTCTTTTAAGCAGCAAGAAGGTTTTCGTTATCATGCGCG
TGATGTCGCGCTCTATCGCGCACATTTGGAAAACTGTCCCATTATTTTGGGTTCCGCAACACCAAGTATGGAAAGCTATG
CACTGGCCGACCAAGGTAAACTGACCCGACTAGAATTAAATGAACGTGCAGGCACGGCACTGTTGCCTAAGTTACACATC
TTGGATTTAAAAGTTGGGCGCAAACAGCATGGTTTTAGTCAGTTTTTACTGGATGAAATGCACAAGCGTCTGGCGCGCAA
AGAACAGGTACTGATTTTTCTCAATCGACGAGGCTATGCCCCCGTGCTGATTTGTGAAAGTTGTGCTTGGCAAGCGAAAT
GTCCGCATTGTGACGCCAATTTCACCTTGCATACTCAACCTTATCAGCATTTGCATTGTCATCATTGCGGCACCATTCAT
CGCATGCCAGATCATTGCCCGCAATGTCATCATACTGAACTTAAACCGATTGGTATGGGGACTGCCAAAGTTGAAGAAAG
TTTAAAGGAACTCTTTCCAGAATTTGAGGTCATTCGGGTCGATCGAGACTCCACCAGTCGTGTCGGTAGCTGGCAAAAAA
TTTATGATCGCATTCAAAAAAGTGAACCGATTATTTTACTTGGTACACAAATGCTCGCCAAAGGGCATCATTTTCCCTAT
GTATCTTTGGTGGCAATTTTAGATATTGATTCAGGCTTACTTAGTGTCGATTTTCGTGCACCAGAACGAACTGCCCAACT
CATTGTTCAAGTGGCGGGACGTGCAGGACGTGGCGAGAAAAAAGGCGATGTCTATTTACAGACCCTGCGCCCAGAACACC
CTTTATTACACACCTTAGTGGATGGCGATTATCGACAATTTGCCCGTCAAACGTTGAAAGAACGACAACAAGCATTGTTC
CCACCCTATCGTTATGCGGCGCTGATTCGCTGTGAGTCGAAAAGTCAGGAACAAAATCAGCAATATCTGACTGAACATGC
ACAACAACTTCGTCAGATTTCCGAACTCAACATCGATATCTGGGGACCAATTCCCGCCCCGATGGAACGTAAAGCAGGTC
GTTATCAAGCACATATGGTGTTATTTTCCCAAGATCGAGCACGTTTGCACTATTATTTGAGGGCATGGTGGCAAAACATG
TTGCAGCACAAACCTGCCAGCATGAAACTCAGTCTGGATATAGACCCACAGGAATTGAGTTGA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.121

100

0.704