Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG430_RS22125 Genome accession   NZ_CP109055
Coordinates   5034936..5036345 (+) Length   469 a.a.
NCBI ID   WP_327354294.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5029936..5041345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG430_RS22105 (OG430_22115) - 5030203..5031051 (+) 849 WP_327354290.1 hypothetical protein -
  OG430_RS22110 (OG430_22120) - 5031255..5032934 (-) 1680 WP_327354291.1 hypothetical protein -
  OG430_RS22115 (OG430_22125) - 5033080..5033472 (-) 393 WP_327354292.1 MerR family transcriptional regulator -
  OG430_RS22120 (OG430_22130) - 5033539..5034684 (+) 1146 WP_327354293.1 alkene reductase -
  OG430_RS22125 (OG430_22135) radA/sms 5034936..5036345 (+) 1410 WP_327354294.1 DNA repair protein RadA Machinery gene
  OG430_RS22130 (OG430_22140) disA 5036434..5037558 (+) 1125 WP_327354295.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG430_RS22135 (OG430_22145) - 5037588..5038409 (-) 822 WP_327354296.1 hypothetical protein -
  OG430_RS22140 (OG430_22150) - 5038619..5039302 (+) 684 WP_327354297.1 phosphatase PAP2 family protein -
  OG430_RS22145 (OG430_22155) - 5039321..5039971 (-) 651 WP_327354298.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49786.92 Da        Isoelectric Point: 7.7378

>NTDB_id=670320 OG430_RS22125 WP_327354294.1 5034936..5036345(+) (radA/sms) [Streptomyces sp. NBC_01304]
MATRTKSSKDRPAYRCTECGWQTAKWLGRCPECQAWGTVEEYGVPAVRTTAPGRVTSSALPIGQVDGRTATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADEEHRTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERAMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPRDPGKVPAGMKVTEVADMGDALRVLPRSRRREAPREADERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=670320 OG430_RS22125 WP_327354294.1 5034936..5036345(+) (radA/sms) [Streptomyces sp. NBC_01304]
ATGGCCACCCGCACAAAATCCAGCAAGGACCGCCCCGCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCGAAGTGGCT
GGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGTACCCGCGGTCCGCACCACAGCGCCCGGAA
GGGTCACGAGCTCCGCCCTCCCCATCGGCCAGGTCGACGGCCGCACGGCCACGGCCCGCTCGACCGGGGTCGACGAGCTG
GACCGCGTCCTGGGCGGCGGCCTCGTCCCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGAAAGTCGACGCT
CCTCCTGGACGTGGCGGCCAAGGCGGCCGACGAAGAGCACCGCACCCTGTACGTCACCGGCGAGGAATCGGCCAGCCAGG
TCCGCCTCCGCGCCGACCGCATCGGCGCCCTGCACGACCACCTCTACCTCGCGGCCGAGACGGACCTCTCCGCGGTCCTC
GGCCACCTCGACGCCGTCAAGCCGTCCCTCCTGATCCTCGACTCCGTACAGACGATCGCCTCCCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGGGCGATGTCGACCCTCC
TGGTCGGCCACGTGACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTCTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTCTTCCTCACCCGCCGCGACGAGCCGGTCCCCG
GCACCTGCCTGACCGTCACCCTCGAAGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCCCTCACGGTCGACTCACAGATC
CCGTCCCCCCGCCGCACCACCTCCGGCCTGGAGACCTCCCGCGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
GATCACCGCCCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCACGGAGCCGGCCGCGGACCTGG
CCATCGCCCTCGCCCTGGCCAGCGCGGCCAGCGACACTCCCCTGCCCAAGAACTTGGTCGCGATCGGAGAAGTGGGCCTT
GCGGGCGAGGTCAGAAGGGTCACGGGCGTCCAGCGCCGGCTCTCCGAGGCGCACCGTCTCGGCTTCACGCACGCCCTCGT
GCCGCGCGATCCCGGCAAGGTCCCGGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCGCTGCGCGTACTGC
CGAGATCGCGTCGCCGAGAGGCCCCGCGGGAGGCCGATGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.384

96.588

0.409
  radA Streptococcus pneumoniae D39

43.662

90.832

0.397
  radA Streptococcus pneumoniae R6

43.662

90.832

0.397
  radA Streptococcus pneumoniae Rx1

43.662

90.832

0.397
  radA Streptococcus mitis SK321

43.662

90.832

0.397
  radA Streptococcus mitis NCTC 12261

43.662

90.832

0.397
  radA Streptococcus pneumoniae TIGR4

43.662

90.832

0.397