Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MP622_RS07255 Genome accession   NZ_CP094643
Coordinates   1512367..1512738 (-) Length   123 a.a.
NCBI ID   WP_243793251.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1507367..1517738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS07225 (MP622_07225) tadA 1507647..1508162 (-) 516 WP_243793249.1 tRNA adenosine(34) deaminase TadA -
  MP622_RS07230 (MP622_07230) - 1508167..1509291 (-) 1125 WP_016167689.1 enoyl-CoA hydratase/isomerase family protein -
  MP622_RS07235 (MP622_07235) ung 1509288..1510001 (-) 714 WP_104442218.1 uracil-DNA glycosylase -
  MP622_RS07240 (MP622_07240) - 1510044..1510640 (-) 597 WP_044740028.1 6-carboxytetrahydropterin synthase -
  MP622_RS07245 (MP622_07245) gspK 1510749..1511696 (-) 948 WP_044740029.1 type II secretion system minor pseudopilin GspK -
  MP622_RS07250 (MP622_07250) xcpW 1511738..1512364 (-) 627 WP_044740030.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MP622_RS07255 (MP622_07255) xcpV 1512367..1512738 (-) 372 WP_243793251.1 type II secretion system minor pseudopilin GspI Machinery gene
  MP622_RS07260 (MP622_07260) - 1512728..1513279 (-) 552 WP_243793253.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MP622_RS07265 (MP622_07265) - 1513291..1513890 (-) 600 WP_016167682.1 TetR/AcrR family transcriptional regulator -
  MP622_RS07270 (MP622_07270) - 1513945..1514718 (-) 774 WP_044740034.1 TatD family hydrolase -
  MP622_RS07275 (MP622_07275) - 1514744..1515085 (-) 342 WP_016167680.1 PilZ domain-containing protein -
  MP622_RS07280 (MP622_07280) - 1515097..1516083 (-) 987 WP_243793483.1 DNA polymerase III subunit delta' -
  MP622_RS07285 (MP622_07285) kdsB 1516096..1516857 (-) 762 WP_044740035.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13642.59 Da        Isoelectric Point: 7.2037

>NTDB_id=670313 MP622_RS07255 WP_243793251.1 1512367..1512738(-) (xcpV) [Acinetobacter sp. PK01]
MKSKGFTLLEVMVALAIFATAAIALTKVAMQYTQATAQAILRTKAQFVAQNEIAEMQIKGEWLDGTQSEQLSQQGEHWQV
EKSAQSTISPNVQRVEIQVRLFNTETGKAEAGVTHLVFFNNRT

Nucleotide


Download         Length: 372 bp        

>NTDB_id=670313 MP622_RS07255 WP_243793251.1 1512367..1512738(-) (xcpV) [Acinetobacter sp. PK01]
ATGAAATCTAAAGGGTTTACACTATTAGAAGTCATGGTGGCTTTGGCGATTTTTGCAACAGCGGCAATTGCATTGACCAA
AGTCGCAATGCAATATACGCAAGCAACAGCACAGGCAATTTTACGAACGAAAGCTCAGTTTGTTGCACAGAATGAAATTG
CTGAAATGCAAATTAAAGGTGAATGGTTGGATGGTACTCAATCAGAACAACTTTCCCAACAGGGTGAGCATTGGCAAGTA
GAGAAAAGCGCACAATCCACAATTAGCCCTAATGTGCAACGCGTAGAAATACAAGTACGTTTGTTTAATACAGAAACTGG
TAAGGCAGAAGCGGGAGTTACCCATCTGGTCTTTTTTAATAATAGAACATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

71.667

97.561

0.699