Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MTX16_RS26455 Genome accession   NZ_CP094624
Coordinates   5150891..5151169 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain LX43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5145891..5156169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS26435 - 5147563..5148372 (+) 810 WP_000664546.1 papain-like cysteine protease family protein -
  MTX16_RS26440 - 5148398..5149000 (+) 603 WP_098906237.1 hypothetical protein -
  MTX16_RS26445 - 5149244..5149495 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  MTX16_RS26450 - 5149872..5150750 (+) 879 WP_243820996.1 helix-turn-helix domain-containing protein -
  MTX16_RS26455 abrB 5150891..5151169 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MTX16_RS26460 - 5151691..5152941 (+) 1251 WP_071740618.1 hypothetical protein -
  MTX16_RS26465 - 5153009..5153767 (+) 759 WP_243820997.1 TSUP family transporter -
  MTX16_RS26470 - 5154020..5154679 (+) 660 WP_135277608.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=670303 MTX16_RS26455 WP_000842216.1 5150891..5151169(+) (abrB) [Bacillus thuringiensis strain LX43]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=670303 MTX16_RS26455 WP_000842216.1 5150891..5151169(+) (abrB) [Bacillus thuringiensis strain LX43]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489